PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12988s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SRS
Protein Properties Length: 166aa    MW: 18877.4 Da    PI: 9.5639
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12988s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702195.32.1e-6061445154
                DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 
                           + +C+dCGnqakk+C+++RCRtCCks++f+C+th+kstWvpa++r ++++q +++      s +++++kr re++  ++s+ ss+ ++ 
  Araha.12988s0010.1.p   6 GRRCEDCGNQAKKECVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRPHHKHQSQSQ------SPSTSNPKRMREHQRLSNSSPSSSGVQI 88 
                           569******************************************9987666554......2345677777776555555555555444 PP

                DUF702  94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                 ++  ++P+e+ss a frcv+vss+ddg+e++aYqt+v+igGhvf+GiL+dqGle+
  Araha.12988s0010.1.p  89 R-----TTPGHFPAELSSLADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFRGILHDQGLEK 144
                           4.....34467***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.1E-566143IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.6E-28950IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.9E-3094142IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MMMIMGRRCE DCGNQAKKEC VYMRCRTCCK SKAFHCQTHI KSTWVPAYRR PHHKHQSQSQ  60
SPSTSNPKRM REHQRLSNSS PSSSGVQIRT TPGHFPAELS SLADFRCVKV SSIDDGKEQY  120
AYQTTVNIGG HVFRGILHDQ GLEKGMIEHH YNKNSNNHQE LLHVP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12988s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0068411e-87AC006841.7 Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence.
GenBankAY1637771e-87AY163777.1 Arabidopsis thaliana hypothetical protein (F3K23.16) mRNA, partial cds.
GenBankCP0026851e-87CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885613.11e-110protein SHI RELATED SEQUENCE 3
SwissprotQ9SJT86e-93SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLA0A1P8AZ091e-100A0A1P8AZ09_ARATH; SHI-related sequence3
STRINGfgenesh1_pm.C_scaffold_40000481e-100(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.12e-89SHI-related sequence3