PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13048s0014.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 286aa    MW: 31406.3 Da    PI: 10.7409
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13048s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30212270259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+++d  ++++tYeg+H h 
  Araha.13048s0014.1.p 212 SDEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAQDDAMMLIVTYEGDHSHA 270
                           69*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.8E-16176209IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.8E-32199270IPR003657WRKY domain
PROSITE profilePS5081129.643206272IPR003657WRKY domain
SuperFamilySSF1182901.83E-25209270IPR003657WRKY domain
SMARTSM007749.9E-37211271IPR003657WRKY domain
PfamPF031063.4E-26213269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
AVTDVAVNNF KKVISLLGRS RTGHARFRRA PSSTQTSFKQ TMVVEEVAEE KKPETTSVLT  60
KQKTEQYNHG GSAFRVYCPT PIHRRPPLSH NNNNNQNQTK NGSSSSSPPI LTNGAPSTIN  120
FAPSPPVSAT NSFMSSHRCD TDSTQMSSGF EFTNPSQVSG SRGKPPLSSA SLKRRCNSSP  180
SSRCHCSKKR KSRVKRVIRV PAVSSKMADI PSDEFSWRKY GQKPIKGSPH PRGYYKCSSV  240
RGCPARKHVE RAQDDAMMLI VTYEGDHSHA LVLETTTTTN HDKTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21199271273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172190KRRCNSSPSSRCHCSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13048s0014.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0845830.0AY084583.1 Arabidopsis thaliana clone 112528 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869730.10.0probable WRKY transcription factor 7
SwissprotQ9STX00.0WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLD7M8W30.0D7M8W3_ARALL; WRKY DNA-binding protein 7
STRINGscaffold_701908.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-147WRKY DNA-binding protein 7