PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13184s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-X1
Protein Properties Length: 1137aa    MW: 124473 Da    PI: 8.1021
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13184s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.71.1e-07338356119
              zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                           CG+H+C+++CH GpC+pC+
  Araha.13184s0004.1.p 338 CGRHQCERTCHVGPCDPCQ 356
                           ******************6 PP
2zf-NF-X1186.1e-06402419118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CG+H C++ CH+GpC+ C
  Araha.13184s0004.1.p 402 CGNHFCSEVCHPGPCGDC 419
                           ****************99 PP
3zf-NF-X118.34.9e-06464478418
              zf-NF-X1   4 HkCqklCHeGpCppC 18 
                           H+C++ CH G+CppC
  Araha.13184s0004.1.p 464 HTCNEMCHAGDCPPC 478
                           *************** PP
4zf-NF-X118.64.2e-06559577119
              zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                           CG+H+C++lCH G CppC 
  Araha.13184s0004.1.p 559 CGQHSCESLCHSGHCPPCL 577
                           ******************6 PP
5zf-NF-X118.44.6e-06669684116
              zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                           CG+H C ++CH+ pC+
  Araha.13184s0004.1.p 669 CGMHACARTCHPEPCD 684
                           ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578508.83E-5160230No hitNo description
PROSITE profilePS500168.956168229IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.465171227IPR001841Zinc finger, RING-type
PROSITE patternPS013590171226IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.17E-6260321No hitNo description
SMARTSM004380.05283301IPR000967Zinc finger, NF-X1-type
PfamPF014223.8285300IPR000967Zinc finger, NF-X1-type
CDDcd060087.96E-13328376No hitNo description
SMARTSM004385.3E-5338357IPR000967Zinc finger, NF-X1-type
PfamPF014228.8E-6338355IPR000967Zinc finger, NF-X1-type
CDDcd060081.82E-8396437No hitNo description
SMARTSM004382.6E-5402421IPR000967Zinc finger, NF-X1-type
PfamPF014227.3E-5402419IPR000967Zinc finger, NF-X1-type
CDDcd060086.08E-13451498No hitNo description
SMARTSM004382.3E-5461480IPR000967Zinc finger, NF-X1-type
PfamPF014225.3E-4463478IPR000967Zinc finger, NF-X1-type
CDDcd060081.10E-4510570No hitNo description
SMARTSM00438170520555IPR000967Zinc finger, NF-X1-type
PfamPF0142219520531IPR000967Zinc finger, NF-X1-type
CDDcd060083.42E-9549601No hitNo description
SMARTSM004382.0E-4559578IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4559576IPR000967Zinc finger, NF-X1-type
CDDcd060081.01E-6606653No hitNo description
SMARTSM004380.021616634IPR000967Zinc finger, NF-X1-type
PfamPF0142225623633IPR000967Zinc finger, NF-X1-type
SMARTSM004384.7E-4669699IPR000967Zinc finger, NF-X1-type
PfamPF014220.0071669684IPR000967Zinc finger, NF-X1-type
PfamPF014220.029701727IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018708729IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1137 aa     Download sequence    Send to blast
MSFQVRRDRT DDRSRFNPQQ TWIPRNASSS SVVVNEPLLP PNESLDAAAA SRPLYLQRQH  60
NASGPPPYNH HQRSNNNIGP PPPNRHRRNN APDNHHQRID NNLGPPPPIR QRRNNASGTL  120
PDNRQRVASR TRPVNQGKRV AKEENIVSTD PNLPQLVQEL QEKLVKSSIE CMICYDKVGR  180
SANIWSCSSC YSIFHINCIK RWARAPTSID LLAEKNQGDN WRCPGCQSVQ LTSSKEICYQ  240
CFCGKRSDPP SDPYLTPHSC GEPCGKPLEK ELAAAGMTKE DLCPHACVLQ CHPGPCPPCK  300
AFAPPRSCPC GKKMVTTRCS ERRSDLICGQ RCDKLLNCGR HQCERTCHVG PCDPCQVLVN  360
ATCFCKKKVE TVICGDMNVK GELKAEDGVY SCSFNCGKPL GCGNHFCSEV CHPGPCGDCD  420
LLPSRVKTCY CGKTRLEEQI RRSCLDPIPS CSNVCRKLLP CRLHTCNEMC HAGDCPPCLV  480
QVNQKCRCGS TSRAVECYIT TSSETEKFVC AKPCGRKKNC GRHRCSERCC PLLNGKKNDL  540
SGDWDPHVCQ IPCQKKLRCG QHSCESLCHS GHCPPCLEMI FTDLTCACGR TSIPPPLPCG  600
TPVPSCQLPC SIPQPCGHSD THGCHFGDCP PCSAPVEKKC VGGHVVLRNI PCGLKDIRCN  660
KICGKTRRCG MHACARTCHP EPCDSFNESE AGMRVTCRQK CGAPRRDCRH TCAALCHPSA  720
PCPDLSCEFS VTITCSCGRI TATVPCDAGG RSANGSNVYS AAYDEASVLQ KLPAPLQPVE  780
SSGNRIPLGQ RKLSCDDECA KLERKRVLQD AFDITPPNLE ALHFSENSAM TEIISDLYRR  840
DPKWVLAVEE RCKFLVLGKA RGSTSALKVH VFCPMQKDKR DTVRLIAERW KLGVSNAGWE  900
PKRFTVVHVT PKSKPPTRII GARGGAISIG GPHPPFFDPL VDMDPGLVVS LLDLPREANI  960
SALVLRFGGE CELVWLNDKN ALAVFHDHAR AATAMRRLEH GSVYHGAVVV QNDGQSPSLN  1020
NAWGKLPGGS AWDVHKGNPW RKAVIQESDD SWGAEDSPIG GSSTDVQASA QRSAKSNTPI  1080
VTSVNRWSVL EPEKASTSTL EPLAQIEESS SSKTTGKQPV EGSGEEVVDD WEKVCE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13184s0004.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054890.0AC005489.1 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868765.10.0LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLD7KKM70.0D7KKM7_ARALL; NF-X1 type zinc finger family protein
STRINGfgenesh2_kg.1__1086__AT1G10170.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1