PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13232s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 232aa    MW: 26862.1 Da    PI: 9.9694
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13232s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.91.1e-171721186
              trihelix 11 iearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                          ie ++e++ +++rg lk ++We+++ ++ ++ g+ers++qC++k+e+++kr++ ++++++       s +p+++q+e
  Araha.13232s0005.1.p  1 IESYKEKWYAIGRGPLKSTHWEDIAVAVsSRSGVERSSTQCRHKIEKMRKRFRSERQSMGPI-----SIWPFYNQME 72
                          7899**********************998899****************************84.....68*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.9E-15274No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
IESYKEKWYA IGRGPLKSTH WEDIAVAVSS RSGVERSSTQ CRHKIEKMRK RFRSERQSMG  60
PISIWPFYNQ MEELDSNPAP ISARPLTRLP PNSNNHYKDD DDEDDNYEEE EDEDERQSKS  120
RSINYILRRP GTVNRFAGVG GGLLSWGQKE RSSKRKRNDG DGGERRRKGA KAVAAEIKAF  180
AERVMVMEKK KIEFVKETVR LRKEMEIRRS NLIQSSQTQL LEFINNAFDS F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153167KRKRNDGDGGERRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13232s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0286090.0AB028609.2 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8.
GenBankAK1181570.0AK118157.1 Arabidopsis thaliana At3g24860 mRNA for unknown protein, complete cds, clone: RAFL19-47-G19.
GenBankBT0054910.0BT005491.1 Arabidopsis thaliana clone U50805 unknown protein (At3g24860) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002883567.11e-150trihelix transcription factor ASIL1
TrEMBLD7L5T71e-148D7L5T7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__2704__AT3G24860.11e-149(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-134Trihelix family protein