PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13267s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 442aa    MW: 50802.1 Da    PI: 6.3324
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13267s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.18.9e-27116210185
              trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                           +Wt+++v++Li+a++++++++  ++         +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ 
  Araha.13267s0004.1.p 116 KWTDKMVKLLITAVSYIGDDSTMDSgsrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENP 204
                           7**************8877777654456677888**********************************************669999998 PP

              trihelix  80 pyfdql 85 
                           +++d++
  Araha.13267s0004.1.p 205 ALLDSI 210
                           888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-24114237No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDGNFPQGGV VRGGATSYGG FDLQGSMRVQ HQDSMNQQHR HNPNSRPLHE GLPFTMVTGQ  60
TCDHHHQNMS MTEQQKPERE KNSVSDDDEP SFTEEGGDGH NDANKSTKGS PWQRVKWTDK  120
MVKLLITAVS YIGDDSTMDS GSRRKFAVLQ KKGKWKSVSK VMAERGYHVS PQQCEDKFND  180
LNKRYKKLND MLGRGTSCQV VENPALLDSI GYLNDKEKDD VRKIMSSKHL FYEEMCSYHN  240
GNRLHLPHDL ALQRSLQLAL RNRDDHDNDD SRKHQMEDLD DEDHDGDGDE HDEYEEQHYS  300
YGDCRGNHYG GGGGPLKKIR QSHSHEDADH PSHMNSLECN KVSLPQIPFS QADVNQGGAE  360
SGRAASVQKQ WIESRTLQLE EQKLQIQVEL LELEKQRFRW QRFSKKRDQE LERMRMENER  420
MKLENDRMGL ELKQRELGVE L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13267s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458500.0AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankAY0913780.0AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16F40.0AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869362.10.0uncharacterized protein LOC9329218 isoform X1
RefseqXP_020869363.10.0uncharacterized protein LOC9329218 isoform X2
TrEMBLD7KJZ20.0D7KJZ2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2312__AT1G21200.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.10.0sequence-specific DNA binding transcription factors