PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13289s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 244aa    MW: 28658.9 Da    PI: 7.024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13289s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-161158148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+W +eEde+lv+ +++lG ++W++ a   g++R++k+c++rw +yl
  Araha.13289s0003.1.p 11 RGPWLEEEDERLVKFITLLGERRWDSLAIVSGLKRSGKSCRLRWMNYL 58
                          89********************************************97 PP
2Myb_DNA-binding53.74.7e-1764108147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg++++eE+ ++ ++++++G++ W++Iar+++ gRt++++k++w+++
  Araha.13289s0003.1.p  64 RGPMSQEEERIIFQLHALWGNK-WSKIARRLP-GRTDNEIKNYWRTH 108
                           89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.008658IPR017930Myb domain
SuperFamilySSF466894.49E-279105IPR009057Homeodomain-like
SMARTSM007171.3E-121060IPR001005SANT/Myb domain
PfamPF002491.5E-131158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-191265IPR009057Homeodomain-like
CDDcd001679.38E-81358No hitNo description
PROSITE profilePS5129426.16159113IPR017930Myb domain
SMARTSM007171.5E-1663111IPR001005SANT/Myb domain
PfamPF002492.1E-1564108IPR001005SANT/Myb domain
CDDcd001672.37E-1066108No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2466112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDCKKEETLR RGPWLEEEDE RLVKFITLLG ERRWDSLAIV SGLKRSGKSC RLRWMNYLNP  60
SLKRGPMSQE EERIIFQLHA LWGNKWSKIA RRLPGRTDNE IKNYWRTHSR KKEEAQNYDK  120
VIEWRGNTGE ELLHKYKETE ITRTRTTSQE HGFDEVVKEF NQRSMESGKE TNGGICGRES  180
YGVMNSPYEN RISNWISEIS TDQSKANLSE DHSSSSSENN INIGTCWFQE TRDFEEFSCS  240
LWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-2991122104MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-2991122104C-Myb DNA-Binding Domain
1msf_C9e-2991122104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13289s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172560.0AK117256.1 Arabidopsis thaliana At3g53200 mRNA for putative transcription factor (MYB27), complete cds, clone: RAFL16-81-D10.
GenBankAY5195990.0AY519599.1 Arabidopsis thaliana MYB transcription factor (At3g53200) mRNA, complete cds.
GenBankBT0052570.0BT005257.1 Arabidopsis thaliana At3g53200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566980.11e-154myb domain protein 27
SwissprotQ9SCP11e-155MYB27_ARATH; Transcription factor MYB27
TrEMBLR0FT621e-152R0FT62_9BRAS; Uncharacterized protein
STRINGBostr.9544s0002.1.p1e-156(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-154myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]