PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13291s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 347aa    MW: 39510.2 Da    PI: 4.6777
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13291s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.8e-1825112196
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           ff+v+++ +  +s  +v+p+++  +h ++ + +kt +l  + gr W+v +  + +++++++++GW +Fv +n+L++g+f++F +dg+++
  Araha.13291s0004.1.p  25 FFTVFLSQY--SSESMVIPRSYY-QH-LPRRLPKTAILVGTGGRFWKVAM--TSRREQVYFEQGWGNFVADNELNDGEFLTFVFDGHKS 107
                           677774444..44559*******.55.4567999****************..99999**************************998665 PP

                           E..EEEE CS
                    B3  90 felvvkv 96 
                               v++
  Araha.13291s0004.1.p 108 Y--EVSI 112
                           5..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-2018115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2122118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.88823116IPR003340B3 DNA binding domain
CDDcd100173.59E-1723113No hitNo description
SMARTSM010191.2E-1825116IPR003340B3 DNA binding domain
PfamPF023622.3E-1525112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-6247339IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0065248336IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-7255333IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MWATKSRRCA VHTSSMASSD VLPRFFTVFL SQYSSESMVI PRSYYQHLPR RLPKTAILVG  60
TGGRFWKVAM TSRREQVYFE QGWGNFVADN ELNDGEFLTF VFDGHKSYEV SIYGRGDCKE  120
TRAVIQVEEI SDDDTEDYSV SLHSFNNVSL HSLNNVSLDS LDNDSLQADV EIESDSLKAD  180
VEIESDSLEV DVEIESDSDY SPENPDTASI SVESVEVVKP RTSRQRSYKK KTIENPELYL  240
DDPNNICFET CLKLRKFELL VDAQFVKDYS LKFGDKVDYI DGYGKLTATM TKWADQRVCI  300
KKWQKICDRN SLTENDSILC EVLRNKDKVV YAIKIHIFRD AAAAST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-18141181104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13291s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0189071e-123AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBankCP0026861e-123CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886540.10.0B3 domain-containing protein REM21 isoform X2
SwissprotQ9M8K20.0REM21_ARATH; B3 domain-containing protein REM21
TrEMBLD7L4S80.0D7L4S8_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_30004940.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.10.0B3 family protein