PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.1350s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 102aa MW: 11755.5 Da PI: 9.979

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.1350s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.3	4.9e-12	8	96	2	89
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +k+l+ sd + ++ l+lpk+++e++ ++++++++ + d ++s+ v+l r ++++ ++++GWk+ +a Lk+gD++ ++ ++ + Araha.1350s0002.1.p 8 VKKLKDSDLSYNNALYLPKDYVENIvrstgVPIPRNGIQVEILDN-NNSYWVNL--RENQKGPYIGNGWKNIKDARSLKTGDVIKLYWKD-T 95 6999*****************9999988455678888999995.566669..99999**********************99543.4 PP E CS B3 89 e 89 + Araha.1350s0002.1.p 96 K 96 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.2E-12	2	94	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.1E-15	3	96	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.96E-13	6	100	No hit	No description
SMART	SM01019	4.1E-8	7	101	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.502	7	101	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-9	8	96	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MNPNMMLVKK LKDSDLSYNN ALYLPKDYVE NIVRSTGVPI PRNGIQVEIL DNNNSYWVNL 60 RENQKGPYIG NGWKNIKDAR SLKTGDVIKL YWKDTKFIFS M*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.1350s0002.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002886734.1	2e-67	B3 domain-containing protein At1g08985
Swissprot	Q8GWU1	4e-50	Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBL	D7KYM6	5e-66	D7KYM6_ARALL; Uncharacterized protein
STRING	scaffold_200822.1	9e-67	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14170	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08985.1	2e-52	B3 family protein

Link Out ? help Back to Top
Phytozome	Araha.1350s0002.1.p