PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13521s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YB
Protein Properties Length: 179aa    MW: 19469.8 Da    PI: 7.4383
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13521s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.11.1e-5728125198
                 NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                           vreqdrflPian+srimk+ lPan+ki+kdake+vqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkvyl++
  Araha.13521s0002.1.p  28 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMR 116
                           69*************************************************************************************** PP

                 NF-YB  90 yrelegekk 98 
                           yre+eg++k
  Araha.13521s0002.1.p 117 YREMEGDTK 125
                           ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.6E-5426148IPR009072Histone-fold
SuperFamilySSF471138.53E-4131140IPR009072Histone-fold
PfamPF008082.2E-273498IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.3E-216280No hitNo description
PROSITE patternPS0068506581IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.3E-218199No hitNo description
PRINTSPR006156.3E-21100118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE  60
IVQECVSEFI SFITSEASDK CQREKRKTIN GDDLLWAMAT LGFEDYMEPL KVYLMRYREM  120
EGDTKGSAKG GDANAKKDGK SSQNGQFSQL ANQGSFSQGP YGNSQAQQHM MVPMPGTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B9e-4726119194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-4726119194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13521s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0704770.0AY070477.1 Arabidopsis thaliana At2g37060/T2N18.18 mRNA, complete cds.
GenBankAY0916730.0AY091673.1 Arabidopsis thaliana At2g37060/T2N18.18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879649.11e-126nuclear transcription factor Y subunit B-8 isoform X2
RefseqXP_020883881.11e-126nuclear transcription factor Y subunit B-8 isoform X1
SwissprotQ8VYK41e-124NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLD7LJN91e-125D7LJN9_ARALL; Uncharacterized protein
STRINGBostr.23794s0383.1.p1e-127(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-113nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]