PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1352s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 343aa    MW: 37808.3 Da    PI: 6.2654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1352s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09230278355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Araha.1352s0002.1.p 230 NSHSLAERVRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 278
                          58*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16225295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.52E-11225282No hitNo description
PROSITE profilePS5088815.497227277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-16228291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-6230278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-9233283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDEFAAKKKD LVNTPVDSYP PENPMSGPSQ MMDSFRETLW HDGGFNVHTD AGTSFRGNNT  60
DHRPLEMGWN MAQFPADSGF IERAAKFSFV GCGSFSEVMM NQQSSLGVPE STGLILQDTQ  120
IPSGSKLDNG SLKDASKLVK DRSINVSEDS QSSGGNGHDD AKCGVTSSKG FNSKKRKRIG  180
KDREGEEDKM QKDEQSPTSN ANKTNSEKQA SDSLKDGYIH MRARRGQATN SHSLAERVRR  240
EKISERMKFL QDLVPGCDKV TGKAVMLDEI INYVQSLQCQ IEFLSMKLSA VNPVLDFNLE  300
SLLAKDALQS SAPTFPQNMS MLYPPLSYLS QTGFMQPNLS SMS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1352s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1173550.0AK117355.1 Arabidopsis thaliana At1g26260 mRNA for putative transcription factor (bHLH076), complete cds, clone: RAFL16-92-I23.
GenBankBT0053340.0BT005334.1 Arabidopsis thaliana At1g26260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867483.10.0transcription factor bHLH76
SwissprotQ9C6700.0BH076_ARATH; Transcription factor bHLH76
TrEMBLA0A178WLZ90.0A0A178WLZ9_ARATH; CIB5
STRINGAT1G26260.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM166891012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.20.0cryptochrome-interacting basic-helix-loop-helix 5
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]