PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13557s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 166aa    MW: 18301.3 Da    PI: 8.8468
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13557s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS97.32.3e-30616583242
                  GRAS  83 l..fsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleet 161
                           l  f+evsP++ f   +aN+aIl+ ++++   ++  i+D+++s+G+Q p+Ll+aL+sRpegpp ++Ri +v++ +++           +
  Araha.13557s0001.1.p   6 LlkFYEVSPWFAFPINMANSAILQILAQDpidKKGNILDIGVSHGMQCPTLLEALSSRPEGPPsRVRISVVSDLSADipfsVGPPAYIY 94 
                           145*************************9997888************************999889********99999998888999** PP

                  GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                           g +L  fA++l+++++++vl        +++ ++++p+E+l+V+++++l++l    +s+ +er+e  k+ +sl Pk vv++
  Araha.13557s0001.1.p  95 GTQLIGFARSLNIDLQISVL-------DKFQLINTSPRENLIVCVQFRLYQLK---HSILDERSEASKARRSLGPKGVVLC 165
                           ******************96.......4568889******************8...667777789*************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.7011165IPR005202Transcription factor GRAS
PfamPF035147.9E-286165IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MFQKTLLKFY EVSPWFAFPI NMANSAILQI LAQDPIDKKG NILDIGVSHG MQCPTLLEAL  60
SSRPEGPPSR VRISVVSDLS ADIPFSVGPP AYIYGTQLIG FARSLNIDLQ ISVLDKFQLI  120
NTSPRENLIV CVQFRLYQLK HSILDERSEA SKARRSLGPK GVVLC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13557s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373281e-150AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299792.12e-91scarecrow-like protein 29
SwissprotQ9LRW37e-89SCL29_ARATH; Scarecrow-like protein 29
TrEMBLR0I3Y46e-90R0I3Y4_9BRAS; Uncharacterized protein
STRINGXP_006299792.19e-91(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-91GRAS family protein