PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13569s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 162aa    MW: 18628.8 Da    PI: 8.6277
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13569s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26063.93.9e-201271161
                DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamssl 61
                          +Ca C +++++C+k+C +apyfpae+  +f+n+hklFG+ n++k+++  ++e++e+++ss 
  Araha.13569s0002.1.p 12 PCALCTTKNKRCPKNCEFAPYFPAEKLGEFENAHKLFGTPNIMKMMRL-EDENKEMLASSR 71
                          7********************************************986.888888888775 PP
2DUF26036.31.6e-1110114952100
                DUF260  52 eeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                           e++++++ss+++e++a+ +dPv+G +g+i+kl++q+e  k  l++lke+
  Araha.13569s0002.1.p 101 EKQDMLASSILMEGDAWKKDPVRGGFGIIQKLKWQIELRKLYLNELKEN 149
                           67899***********************************999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.711150IPR004883Lateral organ boundaries, LOB
PfamPF031958.5E-171274IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-799146IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDVSRVNVNR APCALCTTKN KRCPKNCEFA PYFPAEKLGE FENAHKLFGT PNIMKMMRLE  60
DENKEMLASS RLIENKEMLA SFESSILIEN KEMLASSKLI EKQDMLASSI LMEGDAWKKD  120
PVRGGFGIIQ KLKWQIELRK LYLNELKENI KVEKEKTELR L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13569s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738682e-70AB473868.1 Arabidopsis thaliana ASL35 mRNA for ASYMMETRIC LEAVES2-like 35 protein, complete cds.
GenBankAC0051692e-70AC005169.3 Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete sequence.
GenBankCP0026852e-70CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888773.13e-84LOB domain-containing protein 9
SwissprotO821984e-57LBD9_ARATH; LOB domain-containing protein 9
TrEMBLD7L0W53e-62D7L0W5_ARALL; Predicted protein
STRINGAl_scaffold_0003_23335e-63(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.12e-59LOB domain-containing protein 9