PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13660s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 370aa    MW: 41133.7 Da    PI: 9.0842
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13660s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05931123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C++C+k F++  +L  Hir H
  Araha.13660s0010.1.p  9 FTCKYCHKKFPSGKSLGGHIRIH 31
                          89*******************99 PP
2zf-C2H212.70.000386683320
                          ETTTTEEESSHHHHHHHH CS
               zf-C2H2  3 CpdCgksFsrksnLkrHi 20
                          C  Cgk+F +   L+ H+
  Araha.13660s0010.1.p 66 CRECGKVFVSLKALRGHM 83
                          9****************9 PP
3zf-C2H212.60.00041323345123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp+C k+F++   L  H r+H
  Araha.13660s0010.1.p 323 HECPICFKMFKSGQALGGHKRSH 345
                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-7535No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5633IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.2E-7927IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.863936IPR007087Zinc finger, C2H2
SMARTSM003550.0092931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.40.106.3E-458100IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5015710.2846491IPR007087Zinc finger, C2H2
SMARTSM003550.0556486IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.42E-76586No hitNo description
PROSITE patternPS0002806687IPR007087Zinc finger, C2H2
PfamPF139129.4E-86687IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-7318345No hitNo description
PROSITE profilePS501579.432323350IPR007087Zinc finger, C2H2
PfamPF139126.2E-10323346IPR007087Zinc finger, C2H2
SMARTSM003550.17323345IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280325345IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEEGKEKLFT CKYCHKKFPS GKSLGGHIRI HTNDNSVGSD RYKKKRLVDQ RKMMAQKQKQ  60
QQQVGCRECG KVFVSLKALR GHMACHHCER NKMLMDNSQS DTETETSSAP IRKRSKRVLM  120
KRSNSESFSN GSLSFVSEID QEVRDAAYTL MMLYSGSRSF KKRRNLVMNS LGESSDNDSA  180
VVETRSSSGD ELKIFNVKNQ VLETGKVGVD DQLRSDDDDG VSLCDSDGSD SDYFTNGPSK  240
SDSDISVDGN TGFGSGFNNS LNRFTNSNEG GSKYELSKSK RALFSYETDS CADTNSKIHH  300
RFRDSKSSMV KKASGEKKKS KGHECPICFK MFKSGQALGG HKRSHSIANQ VADTRNQIDL  360
NLTDSDTDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13660s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K70.0AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893394.10.0zinc finger protein ZAT9
RefseqXP_020870380.10.0zinc finger protein ZAT9
TrEMBLD7KQN90.0D7KQN9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2704__AT1G26590.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-163C2H2-like zinc finger protein