PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13692s0022.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CAMTA
Protein Properties Length: 1030aa    MW: 115773 Da    PI: 5.9826
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13692s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11863.9e-58211382118
                  CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                           l+e ++rwl+++ei++iL+n++k+++++e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+++vl+cyYah+e
  Araha.13692s0022.1.p  21 LSEaQHRWLRPSEICEILQNYHKFHIASESPSRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSIDVLHCYYAHGE 109
                           45559************************************************************************************ PP

                  CG-1  90 enptfqrrcywlLeeelekivlvhylevk 118
                            n++fqrrcyw+Le++l +iv+vhylevk
  Araha.13692s0022.1.p 110 GNENFQRRCYWMLEQDLMHIVFVHYLEVK 138
                           **************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143784.23517143IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-8320138IPR005559CG-1 DNA-binding domain
PfamPF038597.8E-5123137IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.1E-14434520IPR014756Immunoglobulin E-set
PfamPF018335.2E-4434509IPR002909IPT domain
Gene3DG3DSA:2.60.40.103.0E-4435509IPR013783Immunoglobulin-like fold
PfamPF127962.1E-7616694IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.81617728IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.6E-18618729IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.75E-19618728IPR020683Ankyrin repeat-containing domain
CDDcd002042.04E-14623726No hitNo description
SMARTSM002483700634663IPR002110Ankyrin repeat
PROSITE profilePS500888.603634666IPR002110Ankyrin repeat
PROSITE profilePS5008811.22667699IPR002110Ankyrin repeat
SMARTSM002480.0029667696IPR002110Ankyrin repeat
SMARTSM000150.51842864IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.73843872IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.04E-7843892IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0025845863IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092865887IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.395866890IPR000048IQ motif, EF-hand binding site
PfamPF006124.5E-4868887IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    Send to blast
MVDRGSFGFI SPPQLDMEQL LSEAQHRWLR PSEICEILQN YHKFHIASES PSRPASGSLF  60
LFDRKVLRYF RKDGHNWRKK KDGKTIKEAH EKLKVGSIDV LHCYYAHGEG NENFQRRCYW  120
MLEQDLMHIV FVHYLEVKGN RTSIGMKENN SNSVNGTASV NIDSTASPTS TLSSLCEDAD  180
TGDSHQASSV LRASSEPQTG NRYGWTPAPG MRNVSQVHGN RVRESDSQRL VDVRAWDAVG  240
NSVTRYHGQP YCNNLLTPMQ PSNTDSMLVE ENTDKGGRLK AEHIRNPLQT QLNWQIPVQD  300
NLPLPKGHVD LFSLSGMADD TDLALFDQNA QDNFETFSSL LGSENQQPFG ISYQAPPSSM  360
ESEFIPVKKS LLRSEESLKK VDSFSRWASK ELGEMEDLQM QSSRGDIAWT TVECETAAAG  420
ISLSPSLSED QRFTIVDFWP KCAQTDAEVE VMVIGTFLLS PQEVTKYNWS CMFGEVEVPA  480
EILVDGVLCC HAPPHTAGQV PFYVTCSNRF ACSEVREFDF LSGSTQKIDA TDVYGTYTNE  540
ASLQLRFEKM LAHRNFVHEH HIFEDVGEKR RKISKIMSLK EEKEYLLSGT YQRDSIKQEP  600
KGQLFREQFE EELYIWLIHK VTEEGKGPNI LDEDGQGILH FVAALGYDWA IRPMLAAGVN  660
INFRDANGWS ALHWAAFSGR EETVAVLVSL GADAGALTDP SPELPLGKTA ADLAYANGHR  720
GISGFLAESS LTSYLEKLTV DSKENSPANS SGAKAVQTVS ERTAAPMSYG DVPEKLSLKD  780
SLTAVRNATQ AADRLHQVFR MQSFQRKQLS DIGDDDKIDI SDKLAVSFAA SKTKNPGQGD  840
VSLSSAATHI QKKYRGWKKR KEFLLIRQRI VKIQAHVRGH QVRKQYRTVI WSVGLLEKII  900
LRWRRKGNGL RGFKRNAVAK TVEPEPPVSA ICPTIPQEDE YDYLKEGRKQ TEERLEKALT  960
RVKSMVQYPE ARDQYRRLLT VVEGFRENEA SSSASINNKE EEEVNCEEDD FIDIDSLLND  1020
DTLMMSISP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13692s0022.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287400.0AK228740.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 1, complete cds, clone: RAFL16-07-H14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878491.10.0calmodulin-binding transcription activator 1 isoform X4
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLD7M2340.0D7M234_ARALL; Calmodulin-binding transcription activator 1
STRINGBostr.13129s0055.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein