PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1373s0012.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 135aa    MW: 15364.3 Da    PI: 4.9602
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1373s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.91e-191198297
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                         f v+   +  +s+ + +p+++ ++     + +kt++l+   g+sW+v +  + k++++++++GW +Fv +n+Lk+g+ ++F +dg+  +++ 
  Araha.1373s0012.1.p 11 FNVF--LSQYNSNSFLIPRSYYDHLP--RPLPKTVILMGNGGKSWKVAM--KSKREQVYFEQGWANFVAENELKDGEALTFVFDGH--RRYE 94
                         5666..344455668*******5444..56999****************..99*****************************9874..4446 PP

                         EEEE CS
                   B3 94 vkvf 97
                         v+++
  Araha.1373s0012.1.p 95 VSIY 98
                         6554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-215100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-217103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-16898No hitNo description
PROSITE profilePS5086314.5088101IPR003340B3 DNA binding domain
PfamPF023621.4E-171098IPR003340B3 DNA binding domain
SMARTSM010193.4E-1610101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MASSDVLPRF FNVFLSQYNS NSFLIPRSYY DHLPRPLPKT VILMGNGGKS WKVAMKSKRE  60
QVYFEQGWAN FVAENELKDG EALTFVFDGH RRYEVSIYTR GSCKETRAAI EVEEISDETE  120
SDYSCDSLVS VIQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-20910310104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1373s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873693.14e-89B3 domain-containing protein At3g06220
SwissprotQ1PES73e-66Y3622_ARATH; B3 domain-containing protein At3g06220
TrEMBLD7M6N48e-88D7M6N4_ARALL; Uncharacterized protein
STRINGscaffold_601507.11e-88(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-68B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]