PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.13949s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 300aa MW: 34005.5 Da PI: 4.667

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.13949s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.6	3.3e-06	192	230	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L A+eYIk Lq Araha.13949s0001.1.p 192 RKEKLGDRITALQQLVSPF-----GKTDTASVLHDAIEYIKFLQ 230 77788899******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.639	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-11	190	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.24E-6	190	233	No hit	No description
SMART	SM00353	0.001	191	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-9	194	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MTEEFDTTGV CSGTWWSSSN GVFSGCSLPR SAEIVVDLGG FEWQNIDTLD AKTYNENYLN 60 TSTFLGSTNL DTTSQIYVSN QSNIHEEERF NQINSFLEGL FDSNEQLLVP NCPKPELFES 120 FHFFDDVFSN ESRMISVFDH DKPKDDMQAC KSMITCKRAS EKTEEHEDIE SSQPLKRPRL 180 ETPSHFPSFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH DAIEYIKFLQ EQITEKVSSS 240 PYLNSKGSGE QKQWSDKSST HNQDYSPRQD LRSRGLCLIP ISSTFSTPPQ HLDTSSFWN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.13949s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065362	0.0	AY065362.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds.
GenBank	AY122937	0.0	AY122937.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872906.1	0.0	transcription factor bHLH103
Swissprot	Q8VZ22	0.0	BH103_ARATH; Transcription factor bHLH103
TrEMBL	A0A068CL06	0.0	A0A068CL06_ARAHA; At4g21340p-like protein
STRING	fgenesh2_kg.7__2180__AT4G21340.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14712	14	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21340.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.13949s0001.1.p

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743] Goubet PM, et al. Contrasted patterns of molecular evolution in dominant and recessive self-incompatibility haplotypes in Arabidopsis. PLoS Genet., 2012. 8(3): p. e1002495 [PMID:22457631]