PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.14007s0017.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

EIL

Protein Properties

Length: 119aa MW: 14029.2 Da PI: 8.2235

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.14007s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	51	3.8e-16	23	78	1	62
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlk 62 ++lk+rmwkd++l+++lk++k+++ ++ ++ + ++ e++rrkkm+r+QD++LkYM+ Araha.14007s0017.1.p 23 DDLKRRMWKDRNLMEKLKQQKRHSN---DV-VSFT--THRAEASRRKKMARSQDSVLKYMIA 78 79******************964...44.4454..4899*****************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	9.9E-12	23	79	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MVEVEELEPL SPIEDEEEEI SYDDLKRRMW KDRNLMEKLK QQKRHSNDVV SFTTHRAEAS 60 RRKKMARSQD SVLKYMIALF FSKACDSHCA TDLSPQLSFK FFSSLLLLFY FLSLRLKT*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.14007s0017.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL356332	2e-97	AL356332.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T31P16 (ESSA project).
GenBank	CP002688	2e-97	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020878012.1	4e-44	putative ETHYLENE INSENSITIVE 3-like 4 protein isoform X1
Refseq	XP_020878013.1	4e-44	putative ETHYLENE INSENSITIVE 3-like 4 protein isoform X2
Swissprot	Q9LX16	2e-43	EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBL	B7U9T0	2e-43	B7U9T0_ARAAE; AT5G10120-like protein
STRING	fgenesh2_kg.6__972__AT5G10120.1	2e-43	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16143	4	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10120.1	6e-32	EIL family protein

Link Out ? help Back to Top
Phytozome	Araha.14007s0017.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS Seed-specific expression of seven Arabidopsis promoters. Gene, 2014. 553(1): p. 17-23 [PMID:25261846]