PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.14019s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 427aa    MW: 48261.1 Da    PI: 6.251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.14019s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.4e-13248293454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h e+Er+RR+++N++f  Lr ++Pk       +++Ka+ L  Av YI sL
  Araha.14019s0001.1.p 248 SHVEAERQRREKLNHRFYALRAIVPKV-----SRMDKASLLSDAVSYIESL 293
                           799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-2934188IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.507244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.13E-12247297No hitNo description
PfamPF000101.2E-10248293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-17248312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17248313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-15250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MYNLTFSPSL SSSPLSFTQQ TPPIVSSSPA DLALQQKLRF VVETSPDRWA YIIFWHKMFN  60
EPSNRSYLVW VDGHFCGNKN NKSQENYTTN SIECELMMDG GDDLELFYAT SFYSEDGSPR  120
KEIFDESLVW LTGLDELRFS NYERAKEAGF HGVHTLVSIP INNGIIELGS SDSIIQNRNF  180
INRVQSIFGS GKTPEHTNQT GSDPKPAESD HSEIGNRQSG SERKRRRKLE TMDVAVAAEE  240
KHHPPVLSHV EAERQRREKL NHRFYALRAI VPKVSRMDKA SLLSDAVSYI ESLKSKIDDL  300
ETEIKKLKTT MTETDKLDNN SSNTSPFSVE YQINQKPSES NRVSDLEVQV KVVGYEAIIR  360
VQTENVNHPT SALMSALMEM DCRVQHANAS RLSQVVVQDV VVLVPEGLRS EDRLRTTLVR  420
NLRSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-22247314774Transcription factor MYC2
5gnj_B5e-22247314774Transcription factor MYC2
5gnj_E5e-22247314774Transcription factor MYC2
5gnj_F5e-22247314774Transcription factor MYC2
5gnj_G5e-22247314774Transcription factor MYC2
5gnj_I5e-22247314774Transcription factor MYC2
5gnj_M5e-22247314774Transcription factor MYC2
5gnj_N5e-22247314774Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221228ERKRRRKL
2222226RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.14019s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5198120.0AJ519812.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872924.10.0transcription factor bHLH14
SwissprotO230900.0BH014_ARATH; Transcription factor bHLH14
TrEMBLD7M5J60.0D7M5J6_ARALL; Predicted protein
STRINGAl_scaffold_0006_39300.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]