PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.14240s0001.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

FAR1

Protein Properties

Length: 683aa MW: 78264 Da PI: 6.147

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.14240s0001.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.2	7.4e-25	70	161	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke ++w+v+++++ Hn Araha.14240s0001.2.p 70 EYYSTFARKSGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEVvdgVSHWYVSQFSNVHN 157 69******************8888.***************************************99867789******* PP FAR1 87 Hela 90 Hel Araha.14240s0001.2.p 158 HELL 161 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-22	70	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-22	293	386	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.409	552	600	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.5E-7	572	599	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-6	575	602	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence Send to blast
MALKPLNNIW IRRQQCPCGD WKCYIRLEGD ESTCQVTKSE IESTTTSSLY DTVFMPYVGQ 60 IFRTDDEAFE YYSTFARKSG FSIRKARSTE SQNLGVYRRD FVCYRSGFNQ PRKKANVEHP 120 RERKSVRCGC DAKLYLTKEV VDGVSHWYVS QFSNVHNHEL LEDDQVRLLP AYRKIQQGDQ 180 DRILLLSKAG FPVNRIVKLL ELEKGVQAGQ LPFIEKDVRN FVRACKKSVQ ENDAYLTEKR 240 ESDTLELLES CKALAERDMD FAYDCTSDEN QKVENLAWAY GDSVQAYSLF GDVVVFDTTY 300 RSIPYGLLLG VFFGIDNNGK AMLLGCVLLQ DESCRSFTWA LQTFVRFMRG RHPQTILTDI 360 DTGLKEAIAR EMPNTNHVVF MWHIDSKLAS WFSQTLGSHY DEFRGGFDML CRAGNVDEFE 420 QQWNLLVTQF GLVPDRHAAL LYSCRASWSP CYIREHFVAQ TMTPEFNQCI DSFLKRIVAG 480 PTCMQLLLEE VSAAASLAKQ IPPRFTYPSL KTCMPMEDHA RGVLTPYAFS VLQNEMVLSV 540 QYAVAEMANG PYIVHHFKKM EGECCVIWNP ENEEIQCSCK EFEHSGILCR HTLRVLAVKN 600 CFHIPDQYFL LRWRQESPHV AAENQNGQGI GDDSAQTFHS LTETLLTESM ISKDRLDYAN 660 QELSLLIDRV RNIAPANCLY QP*

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence Send to blast

MALKPLNNIW IRRQQCPCGD WKCYIRLEGD ESTCQVTKSE IESTTTSSLY DTVFMPYVGQ  60
IFRTDDEAFE YYSTFARKSG FSIRKARSTE SQNLGVYRRD FVCYRSGFNQ PRKKANVEHP  120
RERKSVRCGC DAKLYLTKEV VDGVSHWYVS QFSNVHNHEL LEDDQVRLLP AYRKIQQGDQ  180
DRILLLSKAG FPVNRIVKLL ELEKGVQAGQ LPFIEKDVRN FVRACKKSVQ ENDAYLTEKR  240
ESDTLELLES CKALAERDMD FAYDCTSDEN QKVENLAWAY GDSVQAYSLF GDVVVFDTTY  300
RSIPYGLLLG VFFGIDNNGK AMLLGCVLLQ DESCRSFTWA LQTFVRFMRG RHPQTILTDI  360
DTGLKEAIAR EMPNTNHVVF MWHIDSKLAS WFSQTLGSHY DEFRGGFDML CRAGNVDEFE  420
QQWNLLVTQF GLVPDRHAAL LYSCRASWSP CYIREHFVAQ TMTPEFNQCI DSFLKRIVAG  480
PTCMQLLLEE VSAAASLAKQ IPPRFTYPSL KTCMPMEDHA RGVLTPYAFS VLQNEMVLSV  540
QYAVAEMANG PYIVHHFKKM EGECCVIWNP ENEEIQCSCK EFEHSGILCR HTLRVLAVKN  600
CFHIPDQYFL LRWRQESPHV AAENQNGQGI GDDSAQTFHS LTETLLTESM ISKDRLDYAN  660
QELSLLIDRV RNIAPANCLY QP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.14240s0001.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	T26D3	0.0	AF262043.1 Arabidopsis thaliana BAC T26D3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020878381.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_020878382.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A178UQZ1	0.0	A0A178UQZ1_ARATH; FRS10
STRING	Bostr.29827s0002.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Araha.14240s0001.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]