PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.14317s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 307aa MW: 34676.7 Da PI: 8.8486

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.14317s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	105.9	2e-33	23	128	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+kv tpsdv+k++rlv+pk++ae++ ++++++ l +ed+sg+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F Araha.14317s0001.1.p 23 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnstTNDNNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSF 111 89*************************9999455568889********************************************* PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++d+ ++ +l++ ++r+ Araha.14317s0001.1.p 112 QRDSGNKDKLYIDWRRR 128 99888999****998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-43	12	134	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.09E-32	20	131	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.24E-26	21	117	No hit	No description
PROSITE profile	PS50863	14.663	23	129	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-30	23	128	IPR003340	B3 DNA binding domain
SMART	SM01019	1.0E-25	23	129	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MNQEDKEKPI EEASSSMERE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDNSTTNDNN 60 KGLLLNFEDR SGNSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS FQRDSGNKDK 120 LYIDWRRRPK IPDHHHQTSH QFAGAMFPRF YTFPHPQMPT NYESHNLYHR FHQRDLGIGY 180 YVRSMERSNP TAVIESVPVM MQRRAQVASM ASRGEKRLRL FGVDMECGGG GGGGGGSVNS 240 TEEESSSSGG SMPRGGVSMV GAGSLLQLRL VSSDDESLVA MEAASLEDHH FFTKKGKSSL 300 SFDLDR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	6e-64	18	131	3	116	B3 domain-containing transcription factor NGA1
5os9_B	6e-64	18	131	3	116	B3 domain-containing transcription factor NGA1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.14317s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL138642	0.0	AL138642.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14.
GenBank	BT025866	0.0	BT025866.1 Arabidopsis thaliana At3g61970 mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_191756.1	0.0	AP2/B3-like transcriptional factor family protein
Swissprot	Q9M268	0.0	NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBL	A0A384KUR3	0.0	A0A384KUR3_ARATH; NGA2
TrEMBL	C3VMM3	0.0	C3VMM3_ARATH; NGATHA2
STRING	AT3G61970.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1307	28	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61970.1	0.0	B3 family protein

Link Out ? help Back to Top
Phytozome	Araha.14317s0001.1.p

Publications ? help Back to Top
Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768]