PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.14341s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 440aa    MW: 49043.1 Da    PI: 6.1254
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.14341s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.59.8e-26264317256
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           ++++WtpeLH++Fv+aveqL G ++A+P++ilelmkv  Lt+++v+SHLQk+R +
  Araha.14341s0001.1.p 264 KKVDWTPELHKKFVQAVEQL-GLDQAIPSRILELMKVGTLTRHNVASHLQKFRQH 317
                           689*****************.********************************76 PP
2Response_reg26.72.8e-10910215109
                           HHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS CS
          Response_reg  15 rqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKp 101
                           r+ le+ +y +v++++d +eal  + ++   +++ ++ ++ +  +  e +k ++ +++ lp i++++    +++ +++ +Ga +fl Kp
  Araha.14341s0001.1.p   9 RSKLESMDY-IVTTFTDETEALSAVVKNPesFHIAIVEVNTSAEN--ESFKFLEGAKDVLPTIMISTDHCITTTMKCIALGAVEFLQKP 94 
                           5668999**.**************9666656*******9999876..77888889999******************************* PP

                           --HHHHHH CS
          Response_reg 102 fdpeelvk 109
                            +pe+l +
  Araha.14341s0001.1.p  95 LSPEKLKN 102
                           *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011022.3411108IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-68102IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.71E-109110IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.7E-129145No hitNo description
CDDcd001564.49E-612107No hitNo description
PROSITE profilePS5129415.727260319IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-24261319IPR009057Homeodomain-like
SuperFamilySSF466897.77E-19262320IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-24264317IPR006447Myb domain, plants
PfamPF002495.7E-8266314IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
GSSSAAETRS KLESMDYIVT TFTDETEALS AVVKNPESFH IAIVEVNTSA ENESFKFLEG  60
AKDVLPTIMI STDHCITTTM KCIALGAVEF LQKPLSPEKL KNIWQHVVHK AFNDGGTNIS  120
VSLKPVKESV VSMLHLDTDM TSDEKDPAPS TPQLKQISRL LGDCQENINF SMENVNSSTE  180
KDNIEDQDIG ESKSVDTTNR ELDDDKVVVK EERGDSEKEE EAETGDLISE KTDSVDIHKK  240
EDETKPINKS SGIKNVSGNK TSRKKVDWTP ELHKKFVQAV EQLGLDQAIP SRILELMKVG  300
TLTRHNVASH LQKFRQHRKN ILPKDDHNHR WIQSRENHRP NQRNYNGFQQ QHRPVMAYPV  360
WGLPGVYPPG AIPPLWPPPL QSIGQPPPWH WKPPYPTVNG NAWGCPVGPP VTGSYITPSN  420
TTAGGFQYSN GAETGFKIMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-14263321563ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.14341s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0415310.0AB041531.1 Arabidopsis thaliana APRR2 mRNA for pseudo-response regulator 2, complete cds.
GenBankAF3857250.0AF385725.1 Arabidopsis thaliana AT4g18020/T6K21_200 mRNA, complete cds.
GenBankAY1439630.0AY143963.1 Arabidopsis thaliana At4g18020/T6K21_200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874565.10.0two-component response regulator-like APRR2
RefseqXP_020874566.10.0two-component response regulator-like APRR2
RefseqXP_020874567.10.0two-component response regulator-like APRR2
RefseqXP_020874568.10.0two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLD7MCX70.0D7MCX7_ARALL; Pseudo-response regulator 2
STRINGfgenesh2_kg.7__2503__AT4G18020.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.50.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]