PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.14376s0008.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 172aa MW: 19209.7 Da PI: 10.4579

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.14376s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.8e-32	26	80	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+++LH+rF++a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl Araha.14376s0008.1.p 26 KQRRCWSSQLHRRFLNALQHLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRL 80 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.026	23	83	IPR017930	Myb domain
SuperFamily	SSF46689	4.25E-18	25	83	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-27	25	83	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.4E-29	26	81	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-6	28	79	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MMETVKRDES MRKDPMMNEK DGGGRKQRRC WSSQLHRRFL NALQHLGGPH VATPKQIREL 60 MKVDGLTNDE VKSHLQKYRL RSRRPRQTVP NNGNSQTQHF VVVGGLWVPQ PDYSTGKTTG 120 GATTSSTTTT TGIYGAMAAP PPPQWLSHSN FRPSIIVEEE TGSHSEEVVI F*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269\|PubMed:19341407, ECO:0000269\|PubMed:22545134, ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.14376s0008.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF367336	0.0	AF367336.1 Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds.
GenBank	AY124865	0.0	AY124865.1 Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010495195.1	7e-98	PREDICTED: myb family transcription factor EFM-like isoform X1
Refseq	XP_010495201.1	8e-98	PREDICTED: myb family transcription factor EFM-like isoform X2
Swissprot	Q9FX67	2e-88	HRS1_ARATH; Transcription factor HRS1
TrEMBL	D7KQE4	3e-95	D7KQE4_ARALL; Myb family transcription factor
STRING	Bostr.13671s0116.1.p	1e-98	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13300.1	3e-88	G2-like family protein

Link Out ? help Back to Top
Phytozome	Araha.14376s0008.1.p

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Kiba T, et al. Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily. Plant Cell, 2018. 30(4): p. 925-945 [PMID:29622567]