PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.14378s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 317aa    MW: 35559 Da    PI: 9.7696
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.14378s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.55e-32130188260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           dDgynWrKYGqK+vkgse+prsY++Ct+++C +kkkve+s   ++++ei+Y+g+Hnh+k
  Araha.14378s0001.1.p 130 DDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQITEIVYKGSHNHPK 188
                           8********************************************************85 PP
2WRKY104.36.8e-33246304159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+ +dpk v++tYeg+H+h+
  Araha.14378s0001.1.p 246 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCCVRKHVERAFQDPKSVITTYEGKHKHQ 304
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-28121189IPR003657WRKY domain
SuperFamilySSF1182909.81E-26123189IPR003657WRKY domain
PROSITE profilePS5081124.398124189IPR003657WRKY domain
SMARTSM007742.7E-34129188IPR003657WRKY domain
PfamPF031067.7E-24130187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-36231306IPR003657WRKY domain
SuperFamilySSF1182901.24E-28238306IPR003657WRKY domain
PROSITE profilePS5081136.024241306IPR003657WRKY domain
SMARTSM007741.5E-36246305IPR003657WRKY domain
PfamPF031061.4E-24247304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070370Biological Processcellular heat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGSFDRQRAV PKFKTATPSP LPLSPSPYFT MPPGLTPADF LDSPLLFTSS NILPSPTTGT  60
FPAQSLNWKN NGLLIDQNEI RYEDVKEQLD FSFINNHTSP PLSLPSMVTQ PLPQLDVSIS  120
EIMSNNKTSD DGYNWRKYGQ KQVKGSENPR SYFKCTYPNC LTKKKVETSL VKGQITEIVY  180
KGSHNHPKPQ STKRSSSTAA AAQQNSSHGD GKDIGEDEAD AKRWKREENV KEPRVVVQTT  240
SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTFTGCCVR KHVERAFQDP KSVITTYEGK  300
HKHQIPTPKR GHTSGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35130306877Probable WRKY transcription factor 4
2lex_A1e-35130306877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00494DAPTransfer from AT5G07100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.14378s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2246990.0AF224699.1 Arabidopsis thaliana WRKY DNA-binding protein 26 (WRKY26) mRNA, complete cds.
GenBankAK1175450.0AK117545.1 Arabidopsis thaliana At5g07100 mRNA for SPF1 like protein, complete cds, clone: RAFL17-19-L10.
GenBankAY0846920.0AY084692.1 Arabidopsis thaliana clone 115195 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871249.10.0probable WRKY transcription factor 26 isoform X1
SwissprotQ9C5T30.0WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLD7LZX60.0D7LZX6_ARALL; WRKY DNA-binding protein 26
STRINGfgenesh1_pm.C_scaffold_60005450.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152911518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.10.0WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]