PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.14378s0004.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YC

Protein Properties

Length: 222aa MW: 25012.1 Da PI: 4.9655

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.14378s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.8	2.4e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + ++ +t+ ++++v+r ++fdfl ++v + Araha.14378s0004.1.p 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQKGAKTVSSLHLKNCVERYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.55E-19	4	89	IPR009072	Histone-fold
Pfam	PF00808	3.6E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YEITLQKGAK 60 TVSSLHLKNC VERYNVFDFL REVVSKVPDY GHGHGQGNAD VTMEDRSISK RRKPTGDEVN 120 DSDEELKKTK VRCNHTKQEL QSPKKEGNDT NSGLGRGFDL NTQSLDIELK PPVITASREL 180 KPAEEYQCWS IPNMANIDPM QLANMSKSLD EDEEDYDEEE S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.14378s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010423260.1	3e-84	PREDICTED: dr1-associated corepressor homolog
TrEMBL	A0A1J3FN67	1e-87	A0A1J3FN67_NOCCA; Dr1-associated corepressor
STRING	XP_010423260.1	1e-83	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-83	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Araha.14378s0004.1.p