PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.14384s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YC

Protein Properties

Length: 231aa MW: 26696.3 Da PI: 5.5056

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.14384s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	104.2	8.4e-33	58	154	2	99
NF-YC 2 lksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 l++fw+++ + ++ +lPlarikk++k+d++vkm+ +++ vll+kac++fi e+tlr+w h+++++r+t++ +di++a+++++i++ Araha.14384s0001.1.p 58 LEKFWAHHN-SIGLHEKLDLPLARIKKVMKSDPQVKMVNSDSHVLLAKACDIFIEEVTLRAWRHTQSCSRNTIQSCDIFKALKESVIYE 145 678887653.344456789******************************************************************** PP NF-YC 91 flvdivprd 99 l+d v Araha.14384s0001.1.p 146 ELTDLVSFG 154 **99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.65E-20	60	141	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	8.3E-24	73	137	IPR009072	Histone-fold
Pfam	PF00808	2.5E-17	76	138	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MVRPIVATSS VNPNPTMEES FVMMEPSEHY VNSVRQIHDQ SRFVCPTDQE RHLLNQDLEK 60 FWAHHNSIGL HEKLDLPLAR IKKVMKSDPQ VKMVNSDSHV LLAKACDIFI EEVTLRAWRH 120 TQSCSRNTIQ SCDIFKALKE SVIYEELTDL VSFGQHSVTH QGVPQDVVQQ QLFPSANVNV 180 PEMKDPIDID KIQQQCLYYR TTEHFIDIGE FELDPKYQVV FFEPLYAQQQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_C	1e-22	76	151	42	117	HapE
4g92_C	1e-22	76	151	42	117	HapE
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.14384s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028606	2e-34	AB028606.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F16F17.
GenBank	CP002688	2e-34	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872129.1	1e-110	nuclear transcription factor Y subunit C-10 isoform X1
TrEMBL	D7MK46	1e-147	D7MK46_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_7003362	1e-147	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19106	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38140.1	3e-39	nuclear factor Y, subunit C12

Link Out ? help Back to Top
Phytozome	Araha.14384s0001.1.p