PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.1504s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TCP

Protein Properties

Length: 226aa MW: 25488 Da PI: 7.7741

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.1504s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	74.4	3.5e-23	23	81	17	70
TCP 17 gRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssa 70 R R+Rl+++ca ++F+L+ eLGf++d++t+ WLl++a+pai ++tg s++++ Araha.1504s0001.1.p 23 DRNNRIRLPVSCASQIFQLTHELGFKTDGETVGWLLRNAEPAIFAATGHsvnttSNDTS 81 3667*********************************************5543322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	15.023	12	68	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.3E-19	23	83	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MVSKNNKNNI ERKGRRTPRS SKDRNNRIRL PVSCASQIFQ LTHELGFKTD GETVGWLLRN 60 AEPAIFAATG HSVNTTSNDT SNEFIHSYMN IGTHNNYHYT DTSGVVYNNN YNDTSGVVYR 120 NYYNCTIDNS VHYADTSGVV SHRRENITGH HGLVFPAATM AEYGPATSFP TNDMRENGHL 180 MVNQNRSVML RPSVSQQQPQ PQPLFDEFYK VEMGNSEQTY VPSRD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.1504s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002875712.1	1e-122	transcription factor TCP16
TrEMBL	D7LNL1	1e-120	D7LNL1_ARALL; Uncharacterized protein
STRING	scaffold_501359.1	1e-121	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16163	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	5e-32	TCP domain protein 16

Link Out ? help Back to Top
Phytozome	Araha.1504s0001.1.p