PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15383s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 594aa    MW: 66708.2 Da    PI: 4.7141
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15383s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.99.3e-1352245933374
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           + L++cA+a+s+g+ e+a +++++l++++s +gdp qR+aay++e+Laar+a s++ +y+al+++e +   s+e+laa+++++ev+P++
  Araha.15383s0001.1.p 224 QILISCARALSEGKSEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPP---SDERLAAMQVLFEVCPCF 309
                           78*****************************************************************9...9***************** PP

                  GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           kf++l+aN aI ea++gee+vHiiDfdi+qG Q+++L+++ a+ p++ p+lR+Tg+++pes+  s   l+ +g rL+++Ae  gv+f+f
  Araha.15383s0001.1.p 310 KFGFLAANGAIIEAIKGEEEVHIIDFDINQGNQYMTLIRSVAELPGKRPRLRLTGIDDPESVqrSIGGLRIIGLRLEQLAEDNGVSFKF 398
                           ************************************************************9988899********************** PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                           ++ v ++++ +++++L +kpgE+l+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F+ rf+ea eyysa+
  Araha.15383s0001.1.p 399 KA-VPSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFVEAYEYYSAV 486
                           **.7************************************************************************************* PP

                  GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                           f+sl+++lpres+er++vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+p p+s +++++++ l+++ + + y+++ee g
  Araha.15383s0001.1.p 487 FESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSARVTNNIQNLIKQQYCNKYKLKEEMG 575
                           ******************************************************************************888******** PP

                  GRAS 357 slvlgWkdrpLvsvSaWr 374
                           +l ++W++++L+++SaWr
  Araha.15383s0001.1.p 576 ELHFCWEEKSLIVASAWR 593
                           *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.344196573IPR005202Transcription factor GRAS
PfamPF035143.2E-132224593IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYSLNENGN NNGVTSAQIF DQDRSKNPCL  60
TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD SFPYQSRPVL GCSMEFQLPF  120
DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIEE LERALLGDED DKMIGIDNLM  180
EIDSEWSYQN ESEQHQDSPK ESSSADSNSH VSSKEVVSQG TPKQILISCA RALSEGKSEE  240
ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ  300
VLFEVCPCFK FGFLAANGAI IEAIKGEEEV HIIDFDINQG NQYMTLIRSV AELPGKRPRL  360
RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA VPSKTSIVSP STLGCKPGET  420
LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFVEAY  480
EYYSAVFESL DMTLPRESQE RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM  540
AGFNPKPMSA RVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-562245936375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15383s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0154470.0AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence.
GenBankAY0458330.0AY045833.1 Arabidopsis thaliana putative scarecrow 1 protein (At1g21450) mRNA, complete cds.
GenBankAY0966260.0AY096626.1 Arabidopsis thaliana unknown protein (At1g21450) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867511.10.0scarecrow-like protein 1
RefseqXP_020867512.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLD7KK120.0D7KK12_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2335__AT1G21450.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]