PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1545s0005.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 221aa    MW: 24882.3 Da    PI: 4.0703
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1545s0005.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.51.6e-081233126
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpseng 26
                         ++y+GVr++  +g+WvAeIr+p   g
  Araha.1545s0005.2.p 12 CDYRGVRQRT-WGKWVAEIREP---G 33
                         68*****999.*********98...4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-41234IPR001471AP2/ERF domain
PROSITE profilePS5103210.0591346IPR001471AP2/ERF domain
SMARTSM003800.00521354IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-91434IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-51433IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MKGKGGPENG ICDYRGVRQR TWGKWVAEIR EPGRVCARED TNVRSGFAQV KLEDCNDEYV  60
LLDSSQCIKE ELKVKEEVME EHNSAVGFGI GQDPKREILD AWLMGNGNEQ EPLEFGVDET  120
FDINELLGIL DDNNVSGQET MQNQVDRLPN FSYQTQFQDA NLFGSLDPME IAHPGVDYGY  180
PYVQPSEMEN NGIDLDHRRF NDLDIQDLDF GGEKDVHGST *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1545s0005.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070200.0AC007020.5 Arabidopsis thaliana chromosome 2 clone T3G21 map g4514, complete sequence.
GenBankAF0852790.0AF085279.1 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence.
GenBankAY0846950.0AY084695.1 Arabidopsis thaliana clone 115358 mRNA, complete sequence.
GenBankBT0265050.0BT026505.1 Arabidopsis thaliana At2g40340 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885570.11e-129dehydration-responsive element-binding protein 2C isoform X2
SwissprotQ8LFR21e-116DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLD7LF311e-127D7LF31_ARALL; Uncharacterized protein
STRINGscaffold_402826.11e-128(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-109ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]