PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15626s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 130aa    MW: 14769.1 Da    PI: 10.5865
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15626s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.55e-1744103261
                           XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                           ++ +r+rr++kNRe+A rsR+RK+a++ eLe  +++Le+eN+ L ke+ee +ke ++  +
  Araha.15626s0002.1.p  44 AAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKEIEEKRKERYQKLM 103
                           5789**********************************************9999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.1E-144198No hitNo description
SMARTSM003384.4E-1243107IPR004827Basic-leucine zipper domain
PfamPF001705.6E-1644104IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.2774597IPR004827Basic-leucine zipper domain
CDDcd147071.44E-134793No hitNo description
SuperFamilySSF579593.44E-114799No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MIDKVEGSIV AFGNGLDVYG GGGGGSGGVR GKRARVMVEP LDKAAAQRQR RMIKNRESAA  60
RSRERKQAYQ VELEALAAKL EEENELLSKE IEEKRKERYQ KLMEFVIPVV EKPKQQPLRF  120
LRRIRSLEW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15626s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864571e-157AY086457.1 Arabidopsis thaliana clone 25211 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199221.11e-76Basic-leucine zipper (bZIP) transcription factor family protein
SwissprotP427779e-45GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A178UQ193e-75A0A178UQ19_ARATH; Uncharacterized protein
TrEMBLQ8LCQ73e-75Q8LCQ7_ARATH; Uncharacterized protein
TrEMBLQ9FNB93e-75Q9FNB9_ARATH; Basic leucine zipper transcription factor
STRINGAT5G44080.15e-76(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.13e-43bZIP family protein