PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15647s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BES1
Protein Properties Length: 172aa    MW: 18706.9 Da    PI: 10.3818
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15647s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822202.51.3e-62131491145
                DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasas 89 
                           +++gr+ptwkErEnnkrRERrRRaiaaki++GLR+qGnyklpk++DnneVlkALc eAGwvv++DGttyr gs+p+         + + 
  Araha.15647s0004.1.p  13 AATGRMPTWKERENNKRRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCLEAGWVVHEDGTTYRMGSRPT---------EATP 92 
                           579*************************************************************************.........5667 PP

                DUF822  90 pesslqsslkssalaspvesysaspksssfpspssldsislasa.asllpvlsvlsl 145
                            +ss+q+s++ssa++sp++sy+asp+sss+psp+++d+i+++ + ++++ +l++l++
  Araha.15647s0004.1.p  93 LCSSIQLSPQSSAFQSPIPSYQASPSSSSYPSPTRFDHIPNRFDpNQSSTYLQNLAS 149
                           899999999999***************************986444777777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.1E-5715135IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTASGGGEGG STAATGRMPT WKERENNKRR ERRRRAIAAK IFTGLRSQGN YKLPKHCDNN  60
EVLKALCLEA GWVVHEDGTT YRMGSRPTEA TPLCSSIQLS PQSSAFQSPI PSYQASPSSS  120
SYPSPTRFDH IPNRFDPNQS STYLQNLASS GNLAPLRISN SAPVTPPISS PR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A5e-261787372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B5e-261787372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C5e-261787372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D5e-261787372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15647s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0024521e-160BT002452.1 Arabidopsis thaliana putative protein (At3g50750) mRNA, complete cds.
GenBankBT0063101e-160BT006310.1 Arabidopsis thaliana At3g50750 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882382.16e-86BES1/BZR1 homolog protein 1
SwissprotQ9S7F31e-76BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBLD7LTI11e-84D7LTI1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__1413__AT3G50750.12e-85(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144671721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50750.16e-62BES1/BZR1 homolog 1