PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15791s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 261aa    MW: 28348.5 Da    PI: 6.0227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15791s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002185107123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C + F ++  L  H++ H
  Araha.15791s0001.1.p  85 FSCNYCQRKFYSSQALGGHQNAH 107
                           89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-681112No hitNo description
PROSITE profilePS5015711.42785112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MRPILDLEVE ASSDSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP  60
LSSTSESSNP EQQQQQQLSI SKRVFSCNYC QRKFYSSQAL GGHQNAHKRE RTLAKRAMRM  120
GLAGVFPGRG SNSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHAS SHDVGMTRQT  180
PETIIRNIAR FNQGYFGNCI PFYVEDDEAE MLWPGSFRQA TDAVAVEAGN DNLGERKMDF  240
LDVKQAVDME SSLPDLTLKL *
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15791s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0264800.0AC026480.6 Arabidopsis thaliana chromosome 1 BAC F15E12 genomic sequence, complete sequence.
GenBankAF3616300.0AF361630.1 Arabidopsis thaliana At1g66140/F15E12_19 mRNA, complete cds.
GenBankAK2302290.0AK230229.1 Arabidopsis thaliana mRNA for zinc finger protein ZFP4, complete cds, clone: RAFL23-05-K17.
GenBankAK2302320.0AK230232.1 Arabidopsis thaliana mRNA for zinc finger protein ZFP4, complete cds, clone: RAFL23-06-L22.
GenBankAK2302500.0AK230250.1 Arabidopsis thaliana mRNA for zinc finger protein ZFP4, complete cds, clone: RAFL23-17-O17.
GenBankAY0560670.0AY056067.1 Arabidopsis thaliana At1g66140/F15E12_19 mRNA, complete cds.
GenBankAY0580870.0AY058087.1 Arabidopsis thaliana At1g66140/F15E12_19 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176788.11e-146zinc finger protein 4
SwissprotQ392631e-147ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A3P6AU331e-143A0A3P6AU33_BRACM; Uncharacterized protein
TrEMBLR0IFQ51e-143R0IFQ5_9BRAS; Uncharacterized protein
STRINGAT1G66140.11e-145(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66722643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-127zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]