PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15805s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 382aa    MW: 42936 Da    PI: 9.7162
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15805s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF694.4e-222673350
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          + ++s r ++++kR+++++KKAeELS+LC+++v+vi + s+gkl++++
  Araha.15805s0005.1.p 26 SASSSSRATSLIKRQATVFKKAEELSILCGIDVCVICYMSDGKLKTWP 73
                          568999*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-71475IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.182876IPR002100Transcription factor, MADS-box
PfamPF003191.2E-152872IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-1728107IPR002100Transcription factor, MADS-box
CDDcd002664.59E-1736100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MASSSSSSLS SSSSKKNKTL FKKPNSASSS SRATSLIKRQ ATVFKKAEEL SILCGIDVCV  60
ICYMSDGKLK TWPEDREKVK AIARRYGELS ETKRRKGSVD LHEFLERINK DDSKQEEKKK  120
KIKVRRVSRV KYPVWDPRFD NYSVEQLTGL VQSLERNLTR IQYRTHAVVE AQGQRRMQYT  180
NMANQELMMA HTMNQLQQHS NQVSMYLWNH DNGSFSQIPV SALASNQAQS LAPIPSELMI  240
YPNSDVGNYS GSLGVQGTGI NGLQNMNMLT YNNINSVNDF AKQIDQNSRV QSYSSLLGVH  300
EYGNNEFENT NMSSRNNFNV QDYAGLLGVE GTGTNGLQSM NMHDYNNNNN NSINANGLSH  360
QLVQFPTATP DFQFGSIRKQ Y*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15805s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266540.0AB026654.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVE11.
GenBankBT0295490.0BT029549.1 Arabidopsis thaliana At3g18650 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885269.20.0LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL103
SwissprotQ9LSB20.0AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A178V6E80.0A0A178V6E8_ARATH; AGL103
STRINGfgenesh2_kg.3__2072__AT3G18650.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.10.0AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]