PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15809s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 109aa    MW: 12606.7 Da    PI: 9.7932
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15809s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72e-13898290
                          EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3  2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                          +kvlt sd    g l+lpkk +e++        + +++++++ + d +++s++v++  +k s+ry++ +GW +  +a +Lk+gD + ++l+
  Araha.15809s0002.1.p  8 EKVLTDSDLCHAGKLYLPKKQIEKIlstienfAM-PPSGFQVEVLD-NNKSYSVTI--KKDSRRYYMCSGWTKIREARNLKTGDKIRLYLQ 94
                          799***********************99999644.46889999999.88*******..****************************99986 PP

                          SSSEE CS
                    B3 86 grsef 90
                          + ++f
  Araha.15809s0002.1.p 95 D-TKF 98
                          5.454 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-16295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.07E-16398IPR015300DNA-binding pseudobarrel domain
CDDcd100176.93E-155102No hitNo description
SMARTSM010191.7E-77106IPR003340B3 DNA binding domain
PROSITE profilePS508638.7977108IPR003340B3 DNA binding domain
PfamPF023621.6E-11898IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MDPNKMLEKV LTDSDLCHAG KLYLPKKQIE KILSTIENFA MPPSGFQVEV LDNNKSYSVT  60
IKKDSRRYYM CSGWTKIREA RNLKTGDKIR LYLQDTKFIF TFNYALSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15809s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489546.12e-30PREDICTED: B3 domain-containing protein At1g08985-like
TrEMBLD7LN552e-72D7LN55_ARALL; Uncharacterized protein
STRINGscaffold_501593.14e-73(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2935322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.11e-31B3 family protein