PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.1584s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 234aa MW: 25647.4 Da PI: 8.1217

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.1584s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.9	8.8e-30	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++C ++p++ +++q++++ +++k++G++ +++ll++ p++ r+ +++sl+yeA+ r+ +P+yG+vg+++++++ Araha.1584s0002.1.p 4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPGIFRSLLYEACGRIVNPIYGSVGLLWSGNW 93 6*******************9999777889****************************************************** PP DUF260 86 qleqlkaelallk 98 +l+q+++e+++++ Araha.1584s0002.1.p 94 HLCQAAVEAVMRG 106 *****998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.879	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-24	4	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH 60 LRPGIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV EAVMRGSPVT PIACDAAVTG 120 QAPPFNNKLC DIRHVSSKEE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE 180 PKTWIGLELT LGLEPVSRGS HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.1584s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473870	0.0	AB473870.1 Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein, complete cds.
GenBank	BT010943	0.0	BT010943.1 Arabidopsis thaliana At1g67100 gene, complete cds.
GenBank	BT011650	0.0	BT011650.1 Arabidopsis thaliana At1g67100 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002887102.1	1e-171	LOB domain-containing protein 40
Swissprot	Q9ZW96	1e-154	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	D7KUZ4	1e-170	D7KUZ4_ARALL; Predicted protein
STRING	Al_scaffold_0002_1337	1e-171	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15248	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	1e-149	LOB domain-containing protein 40

Link Out ? help Back to Top
Phytozome	Araha.1584s0002.1.p