PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1589s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 262aa    MW: 30171.2 Da    PI: 6.5148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1589s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84e-08137181655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++ r+RR+ri ++ +eL +l+P +     +K + ae+   A +Y+k Lq
  Araha.1589s0005.1.p 137 SIAARKRRRRITEKTQELAKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 181
                          6788*******************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-11129193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-10130195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.57131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5137181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-8137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MIIPETDMFF FQEQPQHQPL HHEKALSPSL FGFDHFYESF LPPQEIFLPS PKTQVFNESQ  60
DLDSFFHTPK HQNLINSSFH FNTHDPFSPS PTSNLLDSYI TEDANISEFR VPDFSSTFKV  120
GWTEQGDTKK RELSAQSIAA RKRRRRITEK TQELAKLIPG SQKHNTAEMF HAAAKYVKFL  180
QAQIEILQLK QSKMQTGDSL EVGREMQFLL ASQEIQEKLS TEEVCVVPRE MVQVLKAEEC  240
ILRNPKISRD INKLLSTNLM N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128145KKRELSAQSIAARKRRRR
2140144RKRRR
3141146KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1589s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885870.0AF488587.1 Arabidopsis thaliana clone bHLH052 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893639.21e-168transcription factor bHLH52
SwissprotQ9SA821e-162BH052_ARATH; Transcription factor bHLH52
TrEMBLD7KFM81e-167D7KFM8_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh1_pm.C_scaffold_10024851e-168(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-152bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]