PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15908s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 242aa    MW: 27344.8 Da    PI: 7.1886
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15908s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.51.1e-22103163259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           dDg++WrKYGqK++k s++ rsYYrC++a   +C+++k+++  ++ p v  +tY g+H+++
  Araha.15908s0001.1.p 103 DDGFTWRKYGQKTIKTSRHQRSYYRCAYAkdrNCNATKRLQMIQDSPPVYRTTYLGQHTCK 163
                           8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.18E-2398163IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-23100163IPR003657WRKY domain
SMARTSM007743.2E-33102164IPR003657WRKY domain
PfamPF031063.5E-23103163IPR003657WRKY domain
PROSITE profilePS5081117.89103165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MFSNIDHKAV AALLHGQGCA NILKTVLDKR EISSVSTEPL INTILDSFSL ALSFVNSHNP  60
QPHHQSSSQN MACLVPRISS KKKICGIKGL GNYRDDFQIP RPDDGFTWRK YGQKTIKTSR  120
HQRSYYRCAY AKDRNCNATK RLQMIQDSPP VYRTTYLGQH TCKAFTVQAD TYGPEMIQFD  180
QVVSESVTPQ LATIEQQAIV IENKATDHTT NQECDINDFL VDFDELWLNE FPPFSSGDPF  240
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-17103163969OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00066PBMTransfer from AT1G66600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15908s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865634.11e-160probable WRKY transcription factor 63
SwissprotQ9C6H51e-130WRK63_ARATH; Probable WRKY transcription factor 63
TrEMBLA0A384L7K91e-128A0A384L7K9_ARATH; WRKY63
TrEMBLC0SV191e-128C0SV19_ARATH; Uncharacterized protein At1g66600 (Fragment)
STRINGXP_010415204.11e-134(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.11e-112ABA overly sensitive mutant 3
Publications ? help Back to Top
  1. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]