PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.15996s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 359aa MW: 40657 Da PI: 6.3802

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.15996s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.7	9.7e-32	199	254	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W++eLH+rF++a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Araha.15996s0001.1.p 199 KHRRCWSQELHRRFLNALKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 254 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.226	196	256	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.0E-28	197	257	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.17E-17	197	256	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-27	199	254	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-7	201	252	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MIKNISTMKN YNQKRERCCE LVEALEEERR KINVFQREFP LCLELVTQAI EAYKREISGT 60 TTDNVYGQSE CSEQTTGECG RVLDLFIPIK HSSTFVEEVE EEVDDKDDDD DDDDEHESHE 120 TNIDFDDKNM KSEWLKSVQL WNQPDAVVSN NRQDHSQETT EMMVELIKRN DEAAEKNNNI 180 QSPATTSGGG GGGRRGQRKH RRCWSQELHR RFLNALKQLG GPHVATPKQI RELMKVDGLT 240 NDEVKSHLQK YRLHARRPSQ TTPNNRNSQT QHFVVVGGIW VPQTNHSTAN VVASGETTTG 300 IYGPMVNPLS SEWPSHSNFG RTISEDRSRS CSNKGIFRCS SPAMSSSTRT KTKDAKIS*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MIKNISTMKN YNQKRERCCE LVEALEEERR KINVFQREFP LCLELVTQAI EAYKREISGT  60
TTDNVYGQSE CSEQTTGECG RVLDLFIPIK HSSTFVEEVE EEVDDKDDDD DDDDEHESHE  120
TNIDFDDKNM KSEWLKSVQL WNQPDAVVSN NRQDHSQETT EMMVELIKRN DEAAEKNNNI  180
QSPATTSGGG GGGRRGQRKH RRCWSQELHR RFLNALKQLG GPHVATPKQI RELMKVDGLT  240
NDEVKSHLQK YRLHARRPSQ TTPNNRNSQT QHFVVVGGIW VPQTNHSTAN VVASGETTTG  300
IYGPMVNPLS SEWPSHSNFG RTISEDRSRS CSNKGIFRCS SPAMSSSTRT KTKDAKIS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.15996s0001.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY085570	0.0	AY085570.1 Arabidopsis thaliana clone 157740 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002875280.1	0.0	transcription factor HHO1 isoform X2
Swissprot	Q9LS00	0.0	HHO1_ARATH; Transcription factor HHO1
TrEMBL	D7LQU6	0.0	D7LQU6_ARALL; Myb family transcription factor
STRING	fgenesh1_pm.C_scaffold_5000265	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13600	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25790.1	0.0	G2-like family protein

Link Out ? help Back to Top
Phytozome	Araha.15996s0001.1.p

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]