PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.16028s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 305aa MW: 35974.3 Da PI: 8.6883

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.16028s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	45.2	3e-14	8	120	10	128
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 +de ++++yLk+++ + + +++i+++++++ +P + +++++ f + + +++a gk +sg W+ g+dk ++sk +g Araha.16028s0003.1.p 8 KDEVIISRYLKRRIVNGDSWPANFIEDANVFNKNPYVE---F--DSDSTSFVIVKPRTEACGKTDG--CESGCWRIIGRDKLIKSKaTG 89 69999******87777555499*******632...2..3344556666666666665444..479**********9888 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + g kk+L f k+++p+ k +Wvm+ey+l Araha.16028s0003.1.p 90 KILGFKKILKFCKKTKPREYKRSWVMEEYTL 120 89*************************98 PP
2	NAM	26.1	2.4e-08	180	290	18	128
NAM 18 yLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkk 104 y k ++++ ++ + ++y ++P +L + ek + + + ++k + + r + + gyWk +d+++++ k ++g k+ Araha.16028s0003.1.p 180 YCVKIMSSEGNDW-PSYVTNNVYCLHPLELV-DPED-EKfQRFGICIFANK----TYAIRdKCNGGYWKILHHDRPIKE-KFGTIGYKR 260 4444444444444.33555689999999995.2222.22233333322222....2233335789***********9.7779* PP NAM 105 tLvfy......kgrapkgektdWvmheyrl 128 ++ f r+ k +k +W+++eyrl Araha.16028s0003.1.p 261 VFEFCetekegYVRNGKDVKLTWTIEEYRL 290 *665532247777789******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	25.34	1	138	IPR003441	NAC domain
Pfam	PF02365	3.4E-9	8	120	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-26	8	137	IPR003441	NAC domain
SuperFamily	SSF101941	7.06E-26	149	303	IPR003441	NAC domain
PROSITE profile	PS51005	17.868	163	304	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEELLNAKDE VIISRYLKRR IVNGDSWPAN FIEDANVFNK NPYVEFDSDS TSFVIVKPRT 60 EACGKTDGCE SGCWRIIGRD KLIKSKATGK ILGFKKILKF CKKTKPREYK RSWVMEEYTL 120 TNNLNWKQDH VICKIRFIFE AEISFLLTKH FYTTSESLLR NELLPSYGFY SNEQENDEFY 180 CVKIMSSEGN DWPSYVTNNV YCLHPLELVD PEDEKFQRFG ICIFANKTYA IRDKCNGGYW 240 KILHHDRPIK EKFGTIGYKR VFEFCETEKE GYVRNGKDVK LTWTIEEYRL SKNVKRNRFL 300 CVIR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.16028s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002888152.1	0.0	NAC domain-containing protein 53
TrEMBL	D7KXC2	0.0	D7KXC2_ARALL; Uncharacterized protein
STRING	scaffold_200606.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3704	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60350.1	1e-153	NAC domain containing protein 24

Link Out ? help Back to Top
Phytozome	Araha.16028s0003.1.p