PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1612s0031.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 253aa    MW: 29268.4 Da    PI: 7.1528
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1612s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.11.4e-1212713088
                         ..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3 30 keesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                         ++ ++++t+++ +sg+ W+++++ ++ s++++l++GWk+ vk+ +L e  f+vF++d++ 
  Araha.1612s0031.1.p 12 TPLPRKVTVKSvSSGNIWRMEMTTNGESDTVFLRDGWKKIVKDENLTEPTFLVFEFDDSC 71
                         55788999*999999*******99*******************************87633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.392181IPR003340B3 DNA binding domain
SMARTSM010190.0096281IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-12379IPR015300DNA-binding pseudobarrel domain
CDDcd100172.25E-8778No hitNo description
Gene3DG3DSA:2.40.330.104.7E-101179IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-91371IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-6162234IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-4165251IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
NLPFVSDKIL GTPLPRKVTV KSVSSGNIWR MEMTTNGESD TVFLRDGWKK IVKDENLTEP  60
TFLVFEFDDS CVIHFCVYEH GSMCKRMRSP MGKEVIEVES DEENEEEDDD DVIVEDEDST  120
KGFYESPRRK DRGDTSRRCY LKTDSHKFDE YLDNKLSPSF PVDMTQRRTR IPAVLINDYS  180
LTFPNLVIVR DKIGKLKRRI SIWKNGSVCL NGIDSITRRN HVKRGDKMLF ELKTVHGYHG  240
LVREIKVHII KC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1612s0031.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881987.21e-151B3 domain-containing protein REM22
SwissprotQ9STF11e-124REM22_ARATH; B3 domain-containing protein REM22
TrEMBLD7LBT41e-125D7LBT4_ARALL; Uncharacterized protein
TrEMBLD7LN481e-125D7LN48_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_40022071e-126(Arabidopsis lyrata)
STRINGfgenesh1_pm.C_scaffold_50008491e-126(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16649810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46770.11e-115B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]