PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1623s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 136aa    MW: 15577.7 Da    PI: 8.3995
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1623s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-1394136345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +W++ E++l++d+ +++G+g+Wk+Iar+  k+R++ q+ s+ q
  Araha.1623s0004.1.p  94 AWSPNEHKLFLDGLNKYGKGDWKSIARECVKTRSPMQVASHAQ 136
                          6****************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.3354IPR001005SANT/Myb domain
SuperFamilySSF466894.56E-7660IPR009057Homeodomain-like
PROSITE profilePS5129413.84387136IPR017930Myb domain
SuperFamilySSF466898.22E-1388136IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-1190136IPR006447Myb domain, plants
SMARTSM007170.09891136IPR001005SANT/Myb domain
CDDcd001672.02E-994136No hitNo description
PfamPF002492.2E-1094136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-994134IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MDEIPLWTRV DDKRFESALV QFPEGSPYFL ENIAQFLQKP LKDVKYYYQA LVDDVALIES  60
GNFALPNYRD DDYVSLKEAT KSKNQGTGKK KGIAWSPNEH KLFLDGLNKY GKGDWKSIAR  120
ECVKTRSPMQ VASHAQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00344DAPTransfer from AT3G10580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1623s0004.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0115605e-80AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBankATAC0134285e-80AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBankCP0026865e-80CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884799.13e-96transcription factor DIVARICATA
SwissprotQ9FNN65e-27SRM1_ARATH; Transcription factor SRM1
TrEMBLD7L9118e-95D7L911_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30009571e-95(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14731719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.21e-76MYB_related family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]