PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.16265s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 590aa    MW: 66200.8 Da    PI: 9.671
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.16265s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.4e-2379174299
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           f +l+++++l ++ l+lp +f +++g+   + ++++++de+ rsW + l+++k+s+++++++GW++F+++ng k+g ++vFkl+g +++
  Araha.16265s0008.1.p  79 FVALVTASNLHKDALYLPQDFSSSNGLHR-KCREIVVRDERERSWALDLRFNKSSDTFYISRGWRSFCDENGKKAGNVFVFKLVG-NRE 165
                           56789999999**************9985.567***************************************************9.677 PP

                           ..EEEEE-S CS
                    B3  91 elvvkvfrk 99 
                           ++v++++++
  Araha.16265s0008.1.p 166 NPVLSFCST 174
                           789999986 PP
2B345.11.8e-14207292189
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f++  +++++l++gr  lp +fa+++g++k++  ++tl  ++g +We ++  r k g++ ++kGWk+F+ an ++  ++++++ + +++
  Araha.16265s0008.1.p 207 FVTLSLTHNNLRRGRQHLPLSFARDNGLDKPG--MITLIGKDGTKWEANF-LREKTGMMCIGKGWKDFAVANAIEGSESLTLEAVLENG 292
                           667778999********************776..8***************.688888999**********************9664433 PP
3B355.21.3e-17353446198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f++ ++++d+l ++r +lp +f++e+g++k++  ++tl  ++g +We ++  r k g++ ++kGWk+F+ angLk+g +++++ +  ++
  Araha.16265s0008.1.p 353 FVTLTLRHDNLIKCRRYLPLSFTRENGMDKPG--KITLVGKDGTKWEANF-LREKTGMMCIRKGWKDFAIANGLKSGKSFTLEAIL-EN 437
                           677788999*****************999776..7***************.688888999***********************776.77 PP

                           E..EEEEE- CS
                    B3  90 felvvkvfr 98 
                           +++++++++
  Araha.16265s0008.1.p 438 GTPMLSLVS 446
                           778877665 PP
4B353.44.8e-175085861799
                           E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           +lp +f+e++g++k +  ++tl  ++  +W  +l    k g + l++GWk+F++ang+k+g+++++++++++++++v+k++++
  Araha.16265s0008.1.p 508 ILPSQFMEANGINKLG--KITLLGQNRMKWFAYL--LSKNGIVALGSGWKGFCEANGVKTGESFTLEYIDEQDTTPVFKFCSN 586
                           69*********99766..8***************..888889***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2374174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-2374174IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.73578174IPR003340B3 DNA binding domain
CDDcd100172.08E-2078173No hitNo description
SMARTSM010196.4E-3279175IPR003340B3 DNA binding domain
PfamPF023624.0E-2179174IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-14199300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-17203295IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-12206293No hitNo description
PROSITE profilePS5086313.028207302IPR003340B3 DNA binding domain
SMARTSM010198.3E-21207302IPR003340B3 DNA binding domain
PfamPF023623.5E-13207291IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-16343451IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-17351445IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-17352444No hitNo description
PROSITE profilePS5086314.24353448IPR003340B3 DNA binding domain
SMARTSM010194.4E-29353448IPR003340B3 DNA binding domain
PfamPF023623.7E-17353446IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-16491586IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-17494586IPR015300DNA-binding pseudobarrel domain
CDDcd100174.50E-14497585No hitNo description
SMARTSM010191.8E-23498587IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18508586IPR003340B3 DNA binding domain
PfamPF023623.7E-16508586IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MVLNSSDLGP SRCETQDLPA SSSNNEQGKT GYISRKKHQQ HPRTEEDGAD DQELARKKKV  60
KRSKTETEAY PSLSDNSCFV ALVTASNLHK DALYLPQDFS SSNGLHRKCR EIVVRDERER  120
SWALDLRFNK SSDTFYISRG WRSFCDENGK KAGNVFVFKL VGNRENPVLS FCSTESIKNN  180
KENCMELERK KKRLKCIDST SPSQNRFVTL SLTHNNLRRG RQHLPLSFAR DNGLDKPGMI  240
TLIGKDGTKW EANFLREKTG MMCIGKGWKD FAVANAIEGS ESLTLEAVLE NGTRLLSLVS  300
IQSTSDRSQQ GECSKDSEKE SISAEPSSGK KIRKTMNNTD VKRDSFPASM NRFVTLTLRH  360
DNLIKCRRYL PLSFTRENGM DKPGKITLVG KDGTKWEANF LREKTGMMCI RKGWKDFAIA  420
NGLKSGKSFT LEAILENGTP MLSLVSEEST SDRSQQGECS KDSEKAISAE LSRGNKKRKA  480
TRNREERRDS SSAIQNRYLT LTLTPEDILP SQFMEANGIN KLGKITLLGQ NRMKWFAYLL  540
SKNGIVALGS GWKGFCEANG VKTGESFTLE YIDEQDTTPV FKFCSNSVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.16265s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069541e-102AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026851e-102CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885758.10.0B3 domain-containing protein REM12 isoform X2
SwissprotP0CAP40.0REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A1P8AXF80.0A0A1P8AXF8_ARATH; Transcriptional factor B3 family protein
STRINGAl_scaffold_0004_4880.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.10.0B3 family protein