PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.16445s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CAMTA
Protein Properties Length: 994aa    MW: 110610 Da    PI: 5.5153
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.16445s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1170.72.3e-53111272117
                  CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                           ++e ++rwlk+ e++ iL+n+e+ +lt+++++rp+sgsl+L+n++++++frkDG++w++k+dg+++ E+he+LKvg+ e+l+cyYah+e
  Araha.16445s0001.1.p  11 YQEaRSRWLKPPEVLFILQNHERLTLTNTAPQRPTSGSLFLFNKRVLKFFRKDGHQWRRKRDGRAIAEAHERLKVGNAEALNCYYAHGE 99 
                           56779************************************************************************************ PP

                  CG-1  90 enptfqrrcywlLeeelekivlvhylev 117
                           ++ptf+rr+yw+L+ e+e+ivlvhy++v
  Araha.16445s0001.1.p 100 QDPTFRRRIYWMLDPEYEHIVLVHYRDV 127
                           **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.3087133IPR005559CG-1 DNA-binding domain
SMARTSM010769.8E-8310128IPR005559CG-1 DNA-binding domain
PfamPF038591.8E-4613127IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.24E-17424508IPR014756Immunoglobulin E-set
CDDcd001022.48E-5424509No hitNo description
PfamPF018334.0E-8424507IPR002909IPT domain
Gene3DG3DSA:2.60.40.101.2E-7424511IPR013783Immunoglobulin-like fold
Gene3DG3DSA:1.25.40.202.5E-14622718IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.64E-15623718IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.433624716IPR020683Ankyrin repeat-containing domain
CDDcd002042.79E-13629716No hitNo description
PfamPF127969.9E-8645717IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0021657686IPR002110Ankyrin repeat
PROSITE profilePS5008810.766657689IPR002110Ankyrin repeat
SMARTSM002481900696725IPR002110Ankyrin repeat
SMARTSM0001559774796IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.766775803IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.92E-8775884IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153.2831853IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.352832861IPR000048IQ motif, EF-hand binding site
PfamPF006120.014835852IPR000048IQ motif, EF-hand binding site
SMARTSM000156.1E-5854876IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.883855879IPR000048IQ motif, EF-hand binding site
PfamPF006122.5E-4857876IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MQSEYEISTL YQEARSRWLK PPEVLFILQN HERLTLTNTA PQRPTSGSLF LFNKRVLKFF  60
RKDGHQWRRK RDGRAIAEAH ERLKVGNAEA LNCYYAHGEQ DPTFRRRIYW MLDPEYEHIV  120
LVHYRDVSDR EEGQQAGGQV YQFAPIPSTL FSSPNSIGTQ NVSYNHYIGD SSDIHQQHSS  180
TSPGIAEVNS NLEGSGSSSE FGQALKMLKE QLSIGDEQVN SVDPLYMQPE SLDSLQFLEY  240
SNDRDHLVQP TTVYQRPENN KLERCYGGNF GAQYNAKNDS NKLERCYGGY VGAEYHSSNL  300
MLVKNDSGGT GGSGDQGSES WKDVLEACEA SIPLNSEGST PSSAKGLLAG LQEDSNWSYN  360
NQVDQSTLLL PQDLGSFEVP VSYSALGALE NNDDYCRMMD NEGKIGLPFE EEMKLAGAHK  420
KKFTIHDISP EWGYSNETTK VIIIGSFLCD PTESTWSCMF GNAQVPFEII KEGVIRCGAP  480
PCGPGKVNLC ITSGDGLSCS EIREFEYRDK PDTCCPKCSG PQTSDMSTSP DELSILVMFV  540
QTLLSDRPSE RKSNLESGND KLLKILKADD DQWRHVIGAV LDGSASSTRT VDWLLQELLK  600
DKLDTWLSSR SCDEDYTTCS LSKQEQGIIH MVAGLGFEWA LYPILGHGVS VDFRDINGWS  660
ALHWAARFGS EKMVAALIAS GASAGAVTDP SRQDPNGKTA ASIAASNGHK GLAGYLSEVA  720
LTNHLSSLTL EETESSKDTA QVQTEITLNS ISEQSPSGNE DQVSLKDTLA AVRNAAQAAA  780
RIQAAFRAHS FRKRKQREAA ISACLQEYGI YCEDIEGISA MSKLTFGKVR NYHLAALSIQ  840
KKYRGYKGRK EFLELRQKVV KIQAHVRGYQ IRKNYKVICW AVGIIDKVVL RWRRKGVGLR  900
GFRQDVESTE DSEDEDILKV FRKQKVDGAV NEAFSRVLSM ANSPEARQQY HRVLKRYCQT  960
KAELGKTETL IGDDDDGLFD IADMEYDTLF ALP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.16445s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100260.0AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890718.10.0calmodulin-binding transcription activator 4 isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLD7KV170.0D7KV17_ARALL; Calmodulin binding protein
STRINGfgenesh1_pm.C_scaffold_20007780.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]