PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.16477s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 142aa    MW: 16539.7 Da    PI: 6.7714
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.16477s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.44.7e-2641252127
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka..eekew.yfFskrdkkyatgkrknratksgyWkat 86 
                           p+ frF+Ptd+ ++++yL+ k  g +  +++++i++v+i +++PwdLp+k k+  +++ + yf+s+  + y          +sgyWk+t
  Araha.16477s0001.1.p   4 PADFRFRPTDDVIIDYYLRLKHLGIEeGDVNHFITTVEISNYDPWDLPSKSKSkcNDNMVcYFYSRD-E-Y----------NSGYWKET 80 
                           5669***************99777663677677***************6444422555442666554.3.2..........58****** PP

                   NAM  87 gkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127
                           g++++++ k    +g ++g kk Lvf +  +p+g+k+dWvmh yr
  Araha.16477s0001.1.p  81 GSNTPIIGKwkrtNGVKIGEKKALVFQSCANPNGSKSDWVMHVYR 125
                           *******9988888889**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-303129IPR003441NAC domain
PROSITE profilePS5100526.9243141IPR003441NAC domain
PfamPF023657.1E-174125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MDYPADFRFR PTDDVIIDYY LRLKHLGIEE GDVNHFITTV EISNYDPWDL PSKSKSKCND  60
NMVCYFYSRD EYNSGYWKET GSNTPIIGKW KRTNGVKIGE KKALVFQSCA NPNGSKSDWV  120
MHVYRPTFLP PDQVIFQFYN L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-18112513139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.16477s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866671.11e-47NAC domain-containing protein 4
SwissprotO819131e-31NAC4_ARATH; NAC domain-containing protein 4
TrEMBLD7KB627e-78D7KB62_ARALL; Uncharacterized protein
STRINGscaffold_100153.11e-78(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1990645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02210.16e-39NAC family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]