PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.16643s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 529aa    MW: 60219.7 Da    PI: 8.8865
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.16643s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.21.2e-143944281549
                           HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  15 kRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                           +Rr   +KKA+EL++LCd+e a+iifs+ gk++ +
  Araha.16643s0001.1.p 394 NRRSSFFKKASELCTLCDVETAIIIFSPGGKVFSF 428
                           8*******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525402.28E-15116335IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM004322.2E-7386431IPR002100Transcription factor, MADS-box
PfamPF003193.2E-14393428IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.862393432IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-14393451IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-8394409IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-8409430IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEYILAGKNI KKFMNVDADT NGPSMNLKMP LFNKLEEAFL SQDSNHGDKI GYLTKPRMLT  60
KEKFLLEVPR MMDFMVVLKP TLNQRSTYLY QNDDKRKKDH PLPPGFGSNI CKDIKLRVPK  120
DGFLGTGIFP HPFHENTMKP HHIEVLNFLC KNLVVENSNG CIIAQNPLSE KTFLMVNFIY  180
GYLEKYPNSK PLLVLPKWML NFWKKDFGEL KVNDLVLLDF YSAKAYTRYQ QLEVLKRWIT  240
NRSIIFLGTK QFSNIVSDNS GTEASDSCRD ILLNIPSLVV FDRGTDPRNE MMSFLKAVAR  300
IKTPRKVLLT GTLYQNNIKE VFNILDVAFP EFLKHNQIGK NIRKFLNVEA DADGPSTNLK  360
MPLFDKLEEA LLSQDSDHGD KIGYLTELRM LTNNRRSSFF KKASELCTLC DVETAIIIFS  420
PGGKVFSFGH PNVNVLLDHS SGRVLRDNNT NLAESNMNLY IQMLNESLTE HILAGKNIRK  480
FLSVDADTGG PSTNLKMALF EKLEEGFLCQ GSNYGDKIGY LTELRMLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.16643s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065850.0AC006585.8 Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883679.10.0protein CHROMATIN REMODELING 35
TrEMBLD7LJI40.0D7LJI4_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_40004390.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.14e-34AGAMOUS-like 28