PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.16688s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 250aa    MW: 28188.7 Da    PI: 9.2534
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.16688s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-181461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g WT+eEd +++ +v+ +G g+W++I+++ g++R++k+c++rw +yl
  Araha.16688s0005.1.p 14 KGLWTEEEDAKILAYVAIHGVGNWSLIPKKAGLNRCGKSCRLRWTNYL 61
                          678*******************************************97 PP
2Myb_DNA-binding52.89.3e-1769110346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +++++E+el++++++  G++ W++Iar+++ gRt++++k++w++
  Araha.16688s0005.1.p  69 SFSPQEEELIIECHRIIGSR-WSSIARKLP-GRTDNDVKNHWNT 110
                           79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-26564IPR009057Homeodomain-like
PROSITE profilePS5129427.917965IPR017930Myb domain
SuperFamilySSF466898.24E-3111108IPR009057Homeodomain-like
SMARTSM007172.3E-161363IPR001005SANT/Myb domain
PfamPF002498.9E-171461IPR001005SANT/Myb domain
CDDcd001671.39E-131761No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2365116IPR009057Homeodomain-like
SMARTSM007175.8E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.80166116IPR017930Myb domain
PfamPF002491.1E-1469110IPR001005SANT/Myb domain
CDDcd001672.17E-1169110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY  60
LRPDLKHDSF SPQEEELIIE CHRIIGSRWS SIARKLPGRT DNDVKNHWNT KLKKKLMKMG  120
IDPVTHKPVS QVLSEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYNS  180
PMMFTNSASS EFQTTPFHFS SHPNHLLNGT TSSCSSSSSS ASITQPNQVP QTPVTNFYWS  240
DFLLSDPVPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.16688s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195910.0AY519591.1 Arabidopsis thaliana MYB transcription factor (At3g28470) mRNA, complete cds.
GenBankDQ4467110.0DQ446711.1 Arabidopsis thaliana clone pENTR221-At3g28470 myb family transcription factor (At3g28470) mRNA, complete cds.
GenBankDQ6531140.0DQ653114.1 Arabidopsis thaliana clone 0000017443_0000012156 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877110.10.0transcription factor MYB35
SwissprotQ9LSI71e-163MYB35_ARATH; Transcription factor MYB35
TrEMBLD7LPU40.0D7LPU4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__614__AT3G28470.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-164MYB family protein
Publications ? help Back to Top
  1. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  2. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  3. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]