PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.16726s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 197aa    MW: 22190 Da    PI: 8.7028
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.16726s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.17.7e-13124176454
                           XCHHHCHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKka..eieeLeekvkeLeaeNkaLkkeleelkk 54 
                           ++r +r++kNRe+A rsR+RK++  ++ eLe +++ L++eN +Lk + ++lk 
  Araha.16726s0001.1.p 124 DRRYKRMIKNRESAARSRARKQEcaYTNELELEIAHLQTENARLKIQQDQLKM 176
                           7899******************5559********************9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-11115176No hitNo description
SMARTSM003381.8E-6121190IPR004827Basic-leucine zipper domain
PfamPF001701.9E-10124175IPR004827Basic-leucine zipper domain
CDDcd147073.09E-24125181No hitNo description
SuperFamilySSF579596.75E-9125175No hitNo description
PROSITE patternPS000360128143IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEEVWKEINF GSLHYHRQLN IGHEPMLKNQ NPNNSTFQDF LNMPLNQQPP PLPPSSSTIV  60
TALYGSLPLP PPATVLSLNS GVGFEFLDTT ETLVASNPHS FEESARVGCL GKKRSQDPDE  120
SRGDRRYKRM IKNRESAARS RARKQECAYT NELELEIAHL QTENARLKIQ QDQLKMAEAT  180
QNQVKKTLQR SSTAPF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.16726s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ1771480.0GQ177148.1 Arabidopsis thaliana ecotype Ll-0 FDP gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889546.11e-136bZIP transcription factor 27 isoform X2
SwissprotQ7PCC61e-122FDP_ARATH; bZIP transcription factor 27
TrEMBLA0A178VTS71e-123A0A178VTS7_ARATH; FDP
STRINGAT2G17770.21e-120(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.21e-117basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]