PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.16782s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 249aa MW: 27665 Da PI: 8.4762

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.16782s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.5	1.1e-26	1	46	10	55
G2-like 10 LHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Araha.16782s0002.1.p 1 LHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 46 9********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	1.5E-18	1	47	IPR006447	Myb domain, plants
SuperFamily	SSF46689	9.32E-11	1	49	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-23	1	48	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.463	1	49	IPR017930	Myb domain
Pfam	PF00249	1.1E-5	2	45	IPR001005	SANT/Myb domain
Pfam	PF14379	4.6E-19	97	141	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
LHDRFVDAVA KLGGADKATP KSVLKLMGLK GLTLYHLKSH LQKYRLGQQQ GKKQNRTEQN 60 KENAGSSYVH FDNCSQGGIS NESRFDSHQR QSGNVPFAEA MRHQVDAQQR FQEQLEVQKK 120 LQMRMEAQGK YLLTLLEKAQ QSIPCGNAGE TDKGQFSDFN LALSRLVGSD HKNQKAGLVA 180 NISHLNADSS EDFRLCGEQE KIETGDACVK PESGFVHFDL NSKSGYDLLN CGKYGIEVKP 240 NMIADRHQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-15	1	45	10	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-15	1	45	10	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-15	1	45	10	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-15	1	45	10	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.16782s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT012003	0.0	BT012003.1 Arabidopsis thaliana At5g45580 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002863468.1	1e-177	myb family transcription factor PHL11
Swissprot	C0SVS4	1e-172	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	D7MTE0	1e-175	D7MTE0_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_8000236	1e-176	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12495	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-175	G2-like family protein

Link Out ? help Back to Top
Phytozome	Araha.16782s0002.1.p

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]