PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1684s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 93aa    MW: 10766.6 Da    PI: 9.6571
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1684s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.72.3e-16957149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         krien++ r+ tf + r gi+KKA  L  LC++eva++++s+t+  y+y
  Araha.1684s0001.1.p  9 KRIENSIERKATFLRFRDGIFKKADALVKLCNVEVAILVISPTNVQYTY 57
                         79**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-22174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.245161IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-14323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-151057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MGRRKIEIKR IENSIERKAT FLRFRDGIFK KADALVKLCN VEVAILVISP TNVQYTYGNP  60
CFNDVVEHTQ NPIASSKLES LMKELERIKE LEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1684s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891385.26e-51LOW QUALITY PROTEIN: MADS-box transcription factor 32
TrEMBLD7KBW76e-50D7KBW7_ARALL; Uncharacterized protein
STRINGscaffold_104372.11e-50(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16164513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.12e-49AGAMOUS-like 102