PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.16901s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 136aa    MW: 15249.4 Da    PI: 10.5219
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.16901s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1853102255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f t e+Aa+a++ a+++l+g
  Araha.16901s0006.1.p  53 IYRGVRQRN-SGKWVCEVREP---NKKSRIWLGTFPTVEMAARAHDVAALALRG 102
                           69****999.7******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1452102IPR001471AP2/ERF domain
CDDcd000181.05E-3052112No hitNo description
SuperFamilySSF541718.5E-2253112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-3253112IPR001471AP2/ERF domain
PROSITE profilePS5103222.24753110IPR001471AP2/ERF domain
SMARTSM003806.8E-3153116IPR001471AP2/ERF domain
PRINTSPR003674.1E-95465IPR001471AP2/ERF domain
PRINTSPR003674.1E-97692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MNPFYSAFSD SFLSISDDRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR  60
NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL RGRSACLNFA DSAWRLRIPE  120
TTCPKEIQKA AAEAAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-15511091271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.16901s0006.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5231730.0EF523173.1 Arabidopsis thaliana ecotype Br-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231740.0EF523174.1 Arabidopsis thaliana ecotype Bs-1 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231750.0EF523175.1 Arabidopsis thaliana ecotype Gre-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231760.0EF523176.1 Arabidopsis thaliana ecotype Co-1 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231770.0EF523177.1 Arabidopsis thaliana ecotype Can-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231780.0EF523178.1 Arabidopsis thaliana ecotype Cvi-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231790.0EF523179.1 Arabidopsis thaliana ecotype Kin-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231800.0EF523180.1 Arabidopsis thaliana ecotype Lip-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231810.0EF523181.1 Arabidopsis thaliana ecotype Pog-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231820.0EF523182.1 Arabidopsis thaliana ecotype Van-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231830.0EF523183.1 Arabidopsis thaliana ecotype Bla-1 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231840.0EF523184.1 Arabidopsis thaliana ecotype Litva C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231850.0EF523185.1 Arabidopsis thaliana ecotype Hau-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231860.0EF523186.1 Arabidopsis thaliana ecotype Mv-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231870.0EF523187.1 Arabidopsis thaliana ecotype Sha C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231880.0EF523188.1 Arabidopsis thaliana ecotype Bur-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231890.0EF523189.1 Arabidopsis thaliana ecotype Per-3 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231900.0EF523190.1 Arabidopsis thaliana ecotype Rsch-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231910.0EF523191.1 Arabidopsis thaliana ecotype Sapporo-0 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
GenBankEF5231920.0EF523192.1 Arabidopsis thaliana ecotype Tscha-1 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865886.13e-96dehydration-responsive element-binding protein 1D
SwissprotQ9FJ935e-94DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLD7MRL27e-95D7MRL2_ARALL; C-repeat binding factor 4
STRINGscaffold_801637.11e-95(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.17e-85C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]