PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.16937s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

FAR1

Protein Properties

Length: 627aa MW: 71481.4 Da PI: 4.8949

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.16937s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.6	2.6e-10	116	167	1	53
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr 53 +fYn+YA+ +GF +r+++s ++++++e + ++C+++g++ ++ + ++++ Araha.16937s0001.1.p 116 SFYNSYARALGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKLLKDAS-SRRKD 167 5****************************************999888.33222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-8	116	167	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-26	223	316	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.877	505	544	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.9E-6	516	542	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.8E-5	519	546	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MGGNSVFSPS DHSLSPNPNH LCISMEDGSQ SSEQLVVDDD DDDLPPIDDT PDLDIDLEDD 60 DDHDGLLHHI AAPNHQDEAE EEEEETRCDD SFANEKCFMA PPAPGMEFDS YDDAYSFYNS 120 YARALGFAIR VKSSWTKRNS KEKRGAVLCC NCQGFKLLKD ASSRRKDTRT GAFRALQDFF 180 FQIQLTSPNF LYLMDLGDDG SLRNVFWIDA RARAAYSHFG DLLLFDTTCL SNAYDLPLVA 240 FVGINHHGDT ILLGCGLVAD QSFDTYVWLF RAWLTCMLGR PPQTFITQQC KAMRTAVSEV 300 FPRAHHRLSL THVLHNIFHS VVQLQDSDLF RMALNRVVYG CLKVEEFEIA WEEMIIRFGL 360 TNNETIQHMF QDRELWAPVY LKDTFLAGAL TFPLGNVAAP FIFSGYVHEN TSLREFLEGY 420 ESFLDQKYTR EALCDSESLK SIPELKTTHP YESQMAKVFT MEIFRRFQDE VSAMSSCFGV 480 TQVHSNGSAS SYVVKEREGE KVRDFEVIYE TSAAAQVRCF CVCGGFSFNG YQCRHVLLLL 540 SHNGLQEVPP QYILQRWRKD VKRLYVAEFG SGRVDIMNPD QWYEHLQRRA VQVVEQGMRS 600 KEHCRAAWEA FKECANKVQF VTEKPS*

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MGGNSVFSPS DHSLSPNPNH LCISMEDGSQ SSEQLVVDDD DDDLPPIDDT PDLDIDLEDD  60
DDHDGLLHHI AAPNHQDEAE EEEEETRCDD SFANEKCFMA PPAPGMEFDS YDDAYSFYNS  120
YARALGFAIR VKSSWTKRNS KEKRGAVLCC NCQGFKLLKD ASSRRKDTRT GAFRALQDFF  180
FQIQLTSPNF LYLMDLGDDG SLRNVFWIDA RARAAYSHFG DLLLFDTTCL SNAYDLPLVA  240
FVGINHHGDT ILLGCGLVAD QSFDTYVWLF RAWLTCMLGR PPQTFITQQC KAMRTAVSEV  300
FPRAHHRLSL THVLHNIFHS VVQLQDSDLF RMALNRVVYG CLKVEEFEIA WEEMIIRFGL  360
TNNETIQHMF QDRELWAPVY LKDTFLAGAL TFPLGNVAAP FIFSGYVHEN TSLREFLEGY  420
ESFLDQKYTR EALCDSESLK SIPELKTTHP YESQMAKVFT MEIFRRFQDE VSAMSSCFGV  480
TQVHSNGSAS SYVVKEREGE KVRDFEVIYE TSAAAQVRCF CVCGGFSFNG YQCRHVLLLL  540
SHNGLQEVPP QYILQRWRKD VKRLYVAEFG SGRVDIMNPD QWYEHLQRRA VQVVEQGMRS  600
KEHCRAAWEA FKECANKVQF VTEKPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.16937s0001.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC009322	0.0	AC009322.1 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence.
GenBank	AC011717	0.0	AC011717.6 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020889734.1	0.0	protein FAR1-RELATED SEQUENCE 8 isoform X1
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A178W116	0.0	A0A178W116_ARATH; FRS8
STRING	AT1G80010.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Araha.16937s0001.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]